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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAACTGTAAGCTGCTTTTGGCTGTCATTGATGAGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAGgtctactttttttttcttagtgtaaaagattgcaactgtgagtacaatttcaggactgacttttgcaatgttcacttttctcag

Basic information

species Oryza sativa
transcript LOC_Os05g01240.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g01240.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G156956_T02 (Zea mays), 5'ss of exon 13
GTACAACTGTAAGCTGCTTTTGGCTGTCATTGATGAGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAGgtctactttttttttcttagtgtaaaagattgcaactgtgagtacaatt--tcaggactgacttttgcaatgttcacttttctcag
||||| | ||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| || ||||||||||||||||| |    || | |     |||| || | ||| ||||   |||   |||  |  || |||||| |||   ||||  |||| |||||
GTACACCAGTAAGCTGCTTTTGGCTGTCATTGATGAGAATCACCGAGGAACTTATGATTTCATCTACCTTCCAATTGATTTTAAGgtatgtcattatgt-----gtgtgaa-ggttggaacttgtagtgagattaatagggtctgactcttgtggtgtttgctttcctcag

upper sequence: LOC_Os05g01240.2 (Oryza sativa), 5'ss of exon 12
lower sequence: EFJ28200 (Selaginella moellendorffii), 5'ss of exon 9
GTACAACTGTAAGCTGCTTTTGGCTGTCATTGATGAGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAGgtctactttttttttcttagtgtaaaagattgcaactgtgagtacaatttcaggactgacttttgcaatgttcacttttctcag
|||||  |  ||||||||| || |    ||||| ||| |||||||||| |||||||||||||||||| | |||||||| ||||||||           || |  | |   || | ||   |  ||      ||  | |   |  | | ||||                 
GTACACATCAAAGCTGCTTCTGTCGACAATTGACGAGCACCACCGTGGTACCTACGATTTCATCTATTTACCAATTGACTTTAAGgtga---------ttttaggcgagcaaaagtgtttccctggtattgat--cggcttttgcctgtgcag----------------

upper sequence: LOC_Os05g01240.2 (Oryza sativa), 5'ss of exon 12
lower sequence: EFJ29695 (Selaginella moellendorffii), 5'ss of exon 7
GTACAACTGTAAGCTGCTTTTGGCTGTCATTGATGAGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAGgtctactttttttttcttagtgtaaaagattgcaactgtgagtacaatttcaggactgacttttgcaatgttcacttttctcag
|||||  |  ||||||||| || |    ||||| ||| |||||||||| |||||||||||||||||| | |||||||| ||||||||           || |  | |   || | ||   |  ||      |||    ||| | |||||||  ||| ||          
GTACACATCAAAGCTGCTTCTGTCGACAATTGACGAGCACCACCGTGGTACCTACGATTTCATCTATTTACCAATTGACTTTAAGgtga---------ttttaggcgagcaaaagtgtttccctgg----tatt----gaccggcttttgcc-tgtgcag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58602954|gb|CK013482.1|CK013482
EST:     AGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAG                         AACCAATGTAATGTGGGGTATGCT
genomic: AGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAGgtctactttt ... cttttctcagAACAAATGTAATGTGGGGTATGCT
EST: gi|33381398|gb|CF196741.1|CF196741
EST:     AGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAG                         AACAAATGTAATGTGGGGTATGCTTTTATCAATATGACTGATCCGCAGCAC
genomic: AGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAGgtctactttt ... cttttctcagAACAAATGTAATGTGGGGTATGCTTTTATCAATATGACTGATCCGCAGCAC
EST: gi|29674666|gb|CB670941.1|CB670941
EST:     AGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAG                         AACAAATGTAATGTGGGCGTATGCTTTTATCAATATGACTGATCCGCAGCA
genomic: AGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAGgtctactttt ... cttttctcagAACAAATGTAATGTGGG-GTATGCTTTTATCAATATGACTGATCCGCAGCA
EST: gi|29674667|gb|CB670942.1|CB670942
EST:     TTGATTTTAAG                         AACAAATGTAATGTGGGGTATGCTTTTATCAATATGACTGATCCGCAGCAC
genomic: TTGATTTTAAGgtctactttt ... cttttctcagAACAAATGTAATGTGGGGTATGCTTTTATCAATATGACTGATCCGCAGCAC
EST: gi|218489237|gb|FG949713.1|FG949713
EST:     AGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAG                         AACAAATGTAATGTGGGGTATGCTTTTATCAATATGACTGATCCGCAGCAC
genomic: AGAACCACCGTGGAACCTACGATTTCATCTATCTCCCAATTGATTTTAAGgtctactttt ... cttttctcagAACAAATGTAATGTGGGGTATGCTTTTATCAATATGACTGATCCGCAGCAC