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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACAGAAAAGGCAGAGCGGGTGATACTGGTTGATTTCCTAAAGGGGCTTCTGAAATTTGATCCCAATGAGCGATGGTCGCCATTGCAGgtatgtgcgacgtagtatggttatattgcattcacatttctgtaaaagtataaggagcattttttcattttcatatttaactatttttatgctcaggtta...

Basic information

species Oryza sativa
transcript LOC_Os04g51370.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g51370.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G156638_T02 (Zea mays), 5'ss of exon 9
AGACAGAAAAGGCAGAGCGGGTGATACTGGTTGATTTCCTAAAGGGGCTTCTGAAATTTGATCCCAATGAGCGATGGTCGCCATTGCAGgtatg--tgcgacg--tagtatggttatattgcattcacatt-tctgtaaaagtataaggagcattttttcattttcatatttaactatttttatgctcaggtta
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AGACAGAAAAAATGGATCGTTTGGGATTAGTTGATTTCTTGAAGGGTCTCCTTGAATTTGATCCAAATAAGAGATGGTCACCATTGCAGgtatggctactgcgattggcacgatttcatttcctaactgttatatacactctcatgttggggcttagggcatgtctagatgttatatcctattgacata-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29636342|gb|CB641351.1|CB641351
EST:     TAAAGGGGCTTCTGAAATTTGATCCCAATGAGCGATGGTCGCCATTGCAG                         GCTTCATGTCATCCATTTATAACAGGCGAACCTTTCACTGGTCCATATGAA
genomic: TAAAGGGGCTTCTGAAATTTGATCCCAATGAGCGATGGTCGCCATTGCAGgtatgtgcga ... cttatttcagGCTTCATGTCATCCATTTATAACAGGCGAACCTTTCACTGGTCCATATGAA
EST: gi|427560|gb|D23628.1|D23628
EST:     TAAAGGGGCTTCTGAAATTTGATCCCAATGAGCGATGGTCGCCATTGCAG                         GCTTCATGTCATCCATTTATAACAGGCGAACCTTTCACTGGTCCATATGAA
genomic: TAAAGGGGCTTCTGAAATTTGATCCCAATGAGCGATGGTCGCCATTGCAGgtatgtgcga ... cttatttcagGCTTCATGTCATCCATTTATAACAGGCGAACCTTTCACTGGTCCATATGAA