1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
CCCGATTCTTAAAAAGCGGATGGGTGAAGCAGTTAGCAATTTCTTGAGAGATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGgcaagtgtttactttcctgaattcttattgttcaattgaaggttattggattgtttctgaaacaaaatttgttgttatgagtgtttaattatatttatat...
species | Oryza sativa |
transcript | LOC_Os04g31190.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAG ATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTEST: gi|29668906|gb|CB665181.1|CB665181
genomic: ATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGgcaagtgttt ... cttgttacagATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTT
EST: ATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAG ATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTEST: gi|29668903|gb|CB665178.1|CB665178
genomic: ATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGgcaagtgttt ... cttgttacagATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTT
EST: ATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAG ATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTEST: gi|29668929|gb|CB665204.1|CB665204
genomic: ATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGgcaagtgttt ... cttgttacagATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTT
EST: ATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAG ATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTEST: gi|29668930|gb|CB665205.1|CB665205
genomic: ATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGgcaagtgttt ... cttgttacagATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTT
EST: ATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAG ATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTTEST: gi|29668904|gb|CB665179.1|CB665179
genomic: ATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGgcaagtgttt ... cttgttacagATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTT
EST: ATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAG ATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTT
genomic: ATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGgcaagtgttt ... cttgttacagATGGATTACATAAATACTTCACATCCAAACTTTGTTGGAGGCAACAAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGATTCTTAAAAAGCGGATGGGTGAAGCAGTTAGCAATTTCTTGAGAGATGGTCTTCGACCTGCAGAGACAATGATAACCCATATTATTGAGATGGAGgcaagtgtttactttcctgaattcttattgttcaattgaaggttattggattgtttctgaaacaaaatttgttgttatgagtgtttaattatatttatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa