1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCTTTCAATGTTCTACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatctctcctccccagatgaacgaaattcttttgtgcaaatgaccaaagggtgtatgacaatactcactgtgcgtgatcag
species | Oryza sativa |
transcript | LOC_Os03g63330.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|89178652|gb|CI391650.1|CI391650
genomic: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: CCAGATGATCTCACCAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|89175548|gb|CI042569.1|CI042569
genomic: CCAGATGATCTCA-CAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|29613803|gb|CB618816.1|CB618816
genomic: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|88969803|gb|CI383305.1|CI383305
genomic: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: CGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAA- GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|33802989|gb|CF327365.1|CF327365
genomic: CGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|33802987|gb|CF327364.1|CF327364
genomic: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|88244538|gb|CI243660.1|CI243660
genomic: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|29618752|gb|CB623764.1|CB623764
genomic: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|88661753|gb|CI459225.1|CI459225
genomic: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|88663347|gb|CI480469.1|CI480469
genomic: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|89172744|gb|CI022623.1|CI022623
genomic: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|58682569|gb|CK071256.1|CK071256
genomic: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|29683344|gb|CB679619.1|CB679619
genomic: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAGEST: gi|86504684|gb|CI147317.1|CI147317
genomic: TACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACAG
EST: ACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAACG GTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACA
genomic: ACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAA-Ggtatccatct ... gcgtgatcagGTGAACATTTCATTGGTGGTCCATGATAGCGAGGCGAAACAGTGTATACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTCAATGTTCTACGGAGAAATGGCGTTAACGTCCAGATGATCTCACAAGGGGCATCCAAGgtatccatctctcctccccagatgaacgaaattcttttgtgcaaatgaccaaagggtgtatgacaatactcactgtgcgtgatcag
- - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - CAGATG