1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AACATTCCGTGACGAAGAGGGCAAGCATTTCTGGGTAGAGTTTGAGATTGTGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGgtacattttgtcaacccaatggcttgtctgatggatattccaaatatttttatttaacttccaactaccctcgcttaccattggatttcag
species | Oryza sativa |
transcript | LOC_Os03g61050.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACG GTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTEST: gi|86479616|gb|CI122249.1|CI122249
genomic: TGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGgtacattttg ... tggatttcagGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTT
EST: TGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACG GTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTEST: gi|86477359|gb|CI119992.1|CI119992
genomic: TGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGgtacattttg ... tggatttcagGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTT
EST: TGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACG GTTACTCTACTTGTCGCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTEST: gi|29616173|gb|CB621185.1|CB621185
genomic: TGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGgtacattttg ... tggatttcagGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTT
EST: TGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACG GTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTEST: gi|66922723|gb|CX109571.1|CX109571
genomic: TGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGgtacattttg ... tggatttcagGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTT
EST: TGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACG GTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTTEST: gi|218501882|gb|FG958333.1|FG958333
genomic: TGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGgtacattttg ... tggatttcagGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTT
EST: CTCCTTATAACGTGACG GTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTT
genomic: CTCCTTATAACGTGACGgtacattttg ... tggatttcagGTTACTCTACTTGTCCCTGGGAATTATCAAGGAGAAAGGCGCATTGTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACATTCCGTGACGAAGAGGGCAAGCATTTCTGGGTAGAGTTTGAGATTGTGGACAAGTACAGGGTTCCTTATGGGAACCAAGCTCCTTATAACGTGACGgtacattttgtcaacccaatggcttgtctgatggatattccaaatatttttatttaacttccaactaccctcgcttaccattggatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT