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ATATATATGGAGTTACAAGATTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAAgtaaggcacttctcttcttacagcgtgcagtctcacacttacataaaactcaatgatcactaatgttgttgcacttctgccag
species | Oryza sativa |
transcript | LOC_Os03g49730.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAA GAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGEST: gi|58684796|gb|CK073483.1|CK073483
genomic: TTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAAgtaaggcact ... cttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCG
EST: TTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAA GAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGEST: gi|86426152|gb|CI071249.1|CI071249
genomic: TTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAAgtaaggcact ... cttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCG
EST: CAGTTTATGAAA GAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGEST: gi|88908158|gb|CI090754.1|CI090754
genomic: CAGTTTATGAAAgtaaggcact ... cttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCG
EST: TGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAA GAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGEST: gi|87029746|gb|CI274427.1|CI274427
genomic: TGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAAgtaaggcact ... cttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCG
EST: TTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAA GAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGEST: gi|86259978|gb|CI065851.1|CI065851
genomic: TTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAAgtaaggcact ... cttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCG
EST: AATTCCAGTTTATGAAA GAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCGEST: gi|7332557|gb|AU085903.1|AU085903
genomic: AATTCCAGTTTATGAAAgtaaggcact ... cttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCG
EST: TTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAA GAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCG
genomic: TTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAAgtaaggcact ... cttctgccagGAATTTACCCACCTTTTCACCCAATGATTGGATTACAGTTCTATACTTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATATATGGAGTTACAAGATTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAAgtaaggcacttctcttcttacagcgtgcagtctcacacttacataaaactcaatgatcactaatgttgttgcacttctgccag
- - - - - - - - - - - - - - - - - - - - - GCAGAT