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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTCAGCCCACTGAAGGTCTTACACGACAAGGAAGTGGAATAATTGGCACATTTGGGCAGTCAGAAGAATTACGTTCTGTCATTGTTGTGATACGCCAgtaaggattactgcctctatgctggttaagctggtattgaatgataaatattggtgttgtgtcttgacatctaatatctgtttag

Basic information

species Oryza sativa
transcript LOC_Os03g48300.3
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g48300.1 (Oryza sativa), 5'ss of exon 12
lower sequence: AT5G15070.2 (Arabidopsis thaliana), 5'ss of exon 13
CAGTTCAGCCCACTGAAGGTCTTACACGACAAGGAAGTGGAATAATTGGCACATTTGGGCAGTCAGAAGAATTACGTTCTGTCATTGTTGTGATACGCCAgtaaggattactgcctctatgctggttaagctggtattgaatgataaatattggtgttgtgtcttgacatctaat-atctgtttag-----
| || ||  | | |||||||||||| || ||||||||||| || || || || |||||||||||||| ||  |||| | |||||||| | |  | || ||||| |  |||       |||| |       |   | || | |  |   | ||        | | |||  |||  | ||||  |        
CTGTCCAATCTAATGAAGGTCTTACCCGCCAAGGAAGTGGCATCATCGGAACTTTTGGGCAGTCAGAGGAGCTACGCTGTGTCATTGCTATTGTTCGGCAgtatgttttagca----tatgatcacctgtcctctcttaactcctctctgttcac-ccaggccctgagttctgtttatcttctcttgacag

upper sequence: LOC_Os03g48300.1 (Oryza sativa), 5'ss of exon 12
lower sequence: AT3G01310.1 (Arabidopsis thaliana), 5'ss of exon 13
CAGTTCAGCCCACTGAAGGTCTTACACGACAAGGAAGTGGAATAATTGGCACATTTGGGCAGTCAGAAGAATTACGTTCTGTCATTGTTGTGATACGCCAgtaaggattactgcct------ctatgctggttaagctggtat-tgaatgataaatattggtgttgtgtcttgacatctaatatctgtttag
| || ||  | | ||||||||| || || || |||||||| || || ||||| |||||||||||||||||  |||||| |||||||| |||  | || ||||| |   ||     |      || | ||   ||  ||  | | ||  |  | |  ||  | |  ||||       | |  ||  |||    
CTGTACAATCTAATGAAGGTCTAACTCGCCAGGGAAGTGGCATCATCGGCACTTTTGGGCAGTCAGAAGAGCTACGTTGTGTCATTGCTGTTGTTCGACAgtatgttgtagcatataatcacctgttcttcctatccttctctctgtttagtcaggatctgagaagtgttcaactttgttttacatgtcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674285|gb|CB670560.1|CB670560
EST:     ACATTTGGGCAGTCAGAAGAATTACGTTCTGTCATTGTTGTGATACGCCA                         TGGCGATCGGACACCAAAGCAGAAAGTGAAATTGAAAGTTACTGAGGAAAA
genomic: ACATTTGGGCAGTCAGAAGAATTACGTTCTGTCATTGTTGTGATACGCCAgtaaggatta ... atctgtttagTGGCGATCGGACACCAAAGCAGAAAGTGAAATTGAAAGTTACTGAGGAAAA