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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGACCAGGAAACAAGATTGTAGACATGATTACAGGACCATACAAACTGGTTAGACGCTGTGAAGTGACTGCAATTCTTATCCTATATGGCCTTCCAAGgtatattgaattattttcatgttttatcgatctaactaatgagtactattatactgcatttactattatttttcgtttttccccttgttattggcgttgattatgcaactggcctaccaacttaggagaagttatttgtcctgaatgcatagattttcatttccattattttgattacatgcag

Basic information

species Oryza sativa
transcript LOC_Os03g42820.4
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g42820.4 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G342105_T02 (Zea mays), 5'ss of exon 7
TTGGACCAGGAAACAAGATTGTAGACATGATTACAGGACCATACAAACTGGTTAGACGCTGTGAAGTGACTGCAATTCTTATCCTATATGGCCTTCCAAGgtatattgaattattttcatgttttatcgatctaactaatgagtactattatactgcatttactattatttttcgtttttccccttgttattggcgttgattatgcaactggcctaccaacttaggagaagttatttgtcctgaatgcatagattttcatttccattattttgattacatgcag
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TTGGACCAGGCAACAGAATCATAGATATGGTCACAGGACCATACAAACTCATTAGACGGTGTGAAGTGACTGCAATTCTTATACTGTACGGGCTGCCAAGgtgattt---tctctctcattatttaacaaactaatta------------------caattgatgtagt---------ttccctttg--atgaacgttgattcta--------ctgccaatccatgagaatgcattcat-------------gttctaattttaatttatttaactgcatgcag