1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
GGTCGTATTTATCAAGGGAAAGAACCACCACAATTTATTGCCCTTTTCCAGCCCATGGTCATTCTAAAGgtatggtacttgatccttaccatattcatgttaaatagaagcagttggtaatagtgggtgttctctaaggaactaggtgcgcactgtctatatagctgaactgtaatgtccaatctcaattcaaacaatatcagttaagtgtatttggcatattgtgcag
species | Oryza sativa |
transcript | LOC_Os03g24220.3 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AAGAACCACCACAATTTATTGCCCTTTTCCAGCCCATGGTCATTCTAAAG GGTGGAATCAGCTCTGGATACCAGAAATGTGTAGAAGAAAAGGGCTTGAAGEST: gi|88692350|gb|CI735925.1|CI735925
genomic: AAGAACCACCACAATTTATTGCCCTTTTCCAGCCCATGGTCATTCTAAAGgtatggtact ... tattgtgcagGGTGGAATCAGCTCTGGATACCAGAAATTTGTAGAAGAAAAGGGCTTGAAG
EST: AAGAACCACCACAATTTATTGCCCTTTTCCAGCCCATGGTCATTCTAAAG GGTGGAATCAGNTCTGGATACCAGAAATTTGTAGAAGAAAAGGGCTTGAAGEST: gi|12404685|gb|AU166286.1|AU166286
genomic: AAGAACCACCACAATTTATTGCCCTTTTCCAGCCCATGGTCATTCTAAAGgtatggtact ... tattgtgcagGGTGGAATCAGCTCTGGATACCAGAAATTTGTAGAAGAAAAGGGCTTGAAG
EST: GGTCATTCTAAAG GGTGGAATCAGCTCTGGATACCAGAAATTTGTAGAAGAAAAGGGCTTGAAGEST: gi|426363|gb|D22226.1|D22226
genomic: GGTCATTCTAAAGgtatggtact ... tattgtgcagGGTGGAATCAGCTCTGGATACCAGAAATTTGTAGAAGAAAAGGGCTTGAAG
EST: GGTCATTCTAAAG GGNGGAATCAGCTCTGGATACCAGAAATTTGTAGAAGAAAAGGGCTTGAAGEST: gi|88569524|gb|CI660699.1|CI660699
genomic: GGTCATTCTAAAGgtatggtact ... tattgtgcagGGTGGAATCAGCTCTGGATACCAGAAATTTGTAGAAGAAAAGGGCTTGAAG
EST: AAGAACCACCACAATTTATTGCCCTTTTCCAGCCCATGGTCATTCTAAAG GGTGGAATCAGCTCTGGATACCAGAAATTTGTAGAAGAAAAGGGCTTGAAG
genomic: AAGAACCACCACAATTTATTGCCCTTTTCCAGCCCATGGTCATTCTAAAGgtatggtact ... tattgtgcagGGTGGAATCAGCTCTGGATACCAGAAATTTGTAGAAGAAAAGGGCTTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTCGTATTTATCAAGGGAAAGAACCACCACAATTTATTGCCCTTTTCCAGCCCATGGTCATTCTAAAGgtatggtacttgatccttaccatattcatgttaaatagaagcagttggtaatagtgggtgttctctaaggaactaggtgcgcactgtctatatagctgaactgtaatgtccaatctcaattcaaacaatatcagttaagtgtatttggcatattgtgcag
- - - - - - - - - AAGAAC