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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGATCATCAAAGGTTGGAGTAAGATTTGATGAACAAATTCCGGGAGGTATTGATCTAGGAGGCAATTGTGAAGTTGATCATGGTTTATTTTGTTCAGgtgattcctcgctctgttgataagttttgaagaactgccagtaaattacattgttctccttctttttaactattatgtttactgctacccttcaattgattcatgcttgatatgactttcttacctactattctttcag

Basic information

species Oryza sativa
transcript LOC_Os03g22420.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g22420.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G042074_T02 (Zea mays), 5'ss of exon 7
AATAGATCATCAAAGGTTGGAGTAAGATTTGATGAACAAATTCCGGGAGGTATTGATCTAGGAGGCAATTGTGAAGTTGATCATGGTTTATTTTGTTCAGgtgattcc---tcgctctgttga-taagtttt-gaagaactgccagtaaattaca--ttgttctccttctttttaac-tattatgtttactgctacccttcaattgattcatgcttgatatgactttcttacctactattctttcag
||||||||||| |||||||| ||||| |||||| || |||||| |||||| |  ||||| ||||||||||| |||||||| |||||||| |||||| ||||| | | |     ||| | ||||  ||||| | | | |||       |   | |   || | |   | |  | ||   | ||||| |||  || || ||||||||| ||       | ||      || |||||  |  | ||||||
AATAGATCATCGAAGGTTGGTGTAAGGTTTGATAAAAAAATTCTGGGAGGAAACGATCTTGGAGGCAATTGCGAAGTTGACCATGGTTTGTTTTGTCCAGgttagtacattctgctatcttgagcaagttctaggaaaacaaattacatgatgctacttatgcagttacactctattattttatggttatggccacacttcaattgtttg------ggtaaa----tcctacctgttcctgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66923715|gb|CX110563.1|CX110563
EST:     TATTGATCTAGGAGGCAATTGTGAAGTTGATCATGGTTTATTTTGTTCAG                         TTGATTCTTTATGCCTCGATGCTCCAGGATGGGAAATTAGATCGAAACACC
genomic: TATTGATCTAGGAGGCAATTGTGAAGTTGATCATGGTTTATTTTGTTCAGgtgattcctc ... attctttcagTTGATTCTTTATGCCTCGATGCTCCAGGATGGGAAATTAGATCGAAACACC
EST: gi|33675853|gb|CF304092.1|CF304092
EST:     TATTGATCTAGGAGGCAATTGTGAAGTTGATCATGGTTTATTTTGTTCAG                         TTGATTCTTTATGCCTCGATGCTCCAGGATGGGAAATTAGATCGAAACACC
genomic: TATTGATCTAGGAGGCAATTGTGAAGTTGATCATGGTTTATTTTGTTCAGgtgattcctc ... attctttcagTTGATTCTTTATGCCTCGATGCTCCAGGATGGGAAATTAGATCGAAACACC