1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGACGATGCCAAAGATGTAGAGTCACTTTGTGCTGAATCGCCACCTCGAAGTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactatacaaatgtcctatccatacctgttttcttttcatggtgtaatgctcataactaaacaatcttctctcctgacag
species | Oryza sativa |
transcript | LOC_Os03g13790.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|86257214|gb|CI004032.1|CI004032
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|86592896|gb|CI270453.1|CI270453
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCCAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|29618832|gb|CB623844.1|CB623844
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|29621696|gb|CB626707.1|CB626707
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTTTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|15854139|gb|BI806935.1|BI806935
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|87022124|gb|CI259196.1|CI259196
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|86478667|gb|CI121300.1|CI121300
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|29621640|gb|CB626651.1|CB626651
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|88841876|gb|CI081132.1|CI081132
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|88197571|gb|CI197421.1|CI197421
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|87014871|gb|CI271470.1|CI271470
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|86477380|gb|CI120013.1|CI120013
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|29626961|gb|CB631972.1|CB631972
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|29626892|gb|CB631903.1|CB631903
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTTTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CATGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|29644351|gb|CB649358.1|CB649358
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCATEST: gi|86482080|gb|CI124713.1|CI124713
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
EST: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGG CCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
genomic: GTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactataca ... ctcctgacagCCTGATTCACTTGGACCATTGGACTTGGACATACCGTCCGCGACATACCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACGATGCCAAAGATGTAGAGTCACTTTGTGCTGAATCGCCACCTCGAAGTGACCACGATTCTGCTCCGAAGGATCAATCTCTAGCTGACTTATACTGGgtactatacaaatgtcctatccatacctgttttcttttcatggtgtaatgctcataactaaacaatcttctctcctgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA