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GCCAGTTGTGGGAACTGATCCAAATGCTCATAATCCTCCAGTTTGGCCAGCGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatattcctataatcctaccaatcatttatttatgtcctgaacgtgtgtagcatgttttctatgctgttgcaaaaaagtgaaaatatattttggt...
species | Oryza sativa |
transcript | LOC_Os03g11200.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CGACATCTGAAGCATCGGGCCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|29628808|gb|CB633819.1|CB633819
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGCCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|89174096|gb|CI041989.1|CI041989
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|58592425|gb|CF990733.1|CF990733
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGCCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|89184800|gb|CI048356.1|CI048356
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|89176256|gb|CI043277.1|CI043277
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|86497082|gb|CI139715.1|CI139715
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|58671000|gb|CK059686.1|CK059686
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: ATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|87041196|gb|CI195818.1|CI195818
genomic: ATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|24468907|gb|CA305856.1|CA305856
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGCCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|86493516|gb|CI136149.1|CI136149
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|88200911|gb|CI198763.1|CI198763
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|86479247|gb|CI121880.1|CI121880
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|86827107|gb|CI270823.1|CI270823
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|29625008|gb|CB630019.1|CB630019
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGCCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|88236165|gb|CI235367.1|CI235367
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAG GCCGCTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|89175874|gb|CI042895.1|CI042895
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|88222149|gb|CI222105.1|CI222105
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|88849567|gb|CI089475.1|CI089475
genomic: CAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: TATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|86480699|gb|CI123332.1|CI123332
genomic: TATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|88222399|gb|CI222355.1|CI222355
genomic: CGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: GGCAACAATGGGGAGCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAAEST: gi|86482600|gb|CI125233.1|CI125233
genomic: GGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
EST: AGCATCGGGGCAACAATGGGGATCTGCTTATGCACCACAG GCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
genomic: AGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatat ... tgcattgcagGCCACTTATCCTGCGTATGGAACTTACGACTACAGCCATCAAATGCCTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAGTTGTGGGAACTGATCCAAATGCTCATAATCCTCCAGTTTGGCCAGCGACATCTGAAGCATCGGGGCAACAATGGGGAGCTGCTTATGCACCACAGgtttttatattcctataatcctaccaatcatttatttatgtcctgaacgtgtgtagcatgttttctatgctgttgcaaaaaagtgaaaatatattttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaaa