1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CAAAATCAATTGCTTATGTTGGCCGTGAGGGAGAAGGAATAATAGGTGCTATCGCTGTATCAGATGTTCTGCGTGATGATGCCAAAGCAACCGTGGACAGgtatttactgcagataccatctgtctgtatatttatcgagtgtctcctgctttatcataattcagtcaaacatatcttcctaacgggacatattcagaat...
species | Oryza sativa |
transcript | LOC_Os03g08070.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATCGCTGTATCAGATGTTCTGCGTGATGATGCCAAAGCAACCGTGGACAG GCTCCAGCAGGAAGAAATCTTGACATTTCTACTATCAGGAGACAGGAAAGAEST: gi|116875017|gb|EC365525.1|EC365525
genomic: ATCGCTGTATCAGATGTTCTGCGTGATGATGCCAAAGCAACCGTGGACAGgtatttactg ... taattaacagGCTCCAGCAGGAAGAAATCTTGACATTTCTACTATCAGGAGACAGGAAAGA
EST: ATCGCTGTATCAGATGTTCTGCGTGATGATGCCAAAGCAACCGTGGTCAG GCTCCAGCAGGAAGAAATCTTGACATTTCTACTATCAGGAGACAGGAAAGAEST: gi|116875544|gb|EC366052.1|EC366052
genomic: ATCGCTGTATCAGATGTTCTGCGTGATGATGCCAAAGCAACCGTGGACAGgtatttactg ... taattaacagGCTCCAGCAGGAAGAAATCTTGACATTTCTACTATCAGGAGACAGGAAAGA
EST: ATCGCTGTATCAGATGTTCTGCGTGATGATGCCAAAGCAACCGTGGTCAG GCTCCAGCAGGAAGAAATCTTGACATTTCTACTATCAGGAGACAGGAAAGAEST: gi|116875028|gb|EC365536.1|EC365536
genomic: ATCGCTGTATCAGATGTTCTGCGTGATGATGCCAAAGCAACCGTGGACAGgtatttactg ... taattaacagGCTCCAGCAGGAAGAAATCTTGACATTTCTACTATCAGGAGACAGGAAAGA
EST: ATCGCTGTATCAGATGTTCTGCGTGATGATGCCAAAGCAACCGTGGACAG GCTCCAGCAGGAAGAAATCTTGACATTTCTACTATCAGGAGACAGGAAAGA
genomic: ATCGCTGTATCAGATGTTCTGCGTGATGATGCCAAAGCAACCGTGGACAGgtatttactg ... taattaacagGCTCCAGCAGGAAGAAATCTTGACATTTCTACTATCAGGAGACAGGAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAATCAATTGCTTATGTTGGCCGTGAGGGAGAAGGAATAATAGGTGCTATCGCTGTATCAGATGTTCTGCGTGATGATGCCAAAGCAACCGTGGACAGgtatttactgcagataccatctgtctgtatatttatcgagtgtctcctgctttatcataattcagtcaaacatatcttcctaacgggacatattcagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA