1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatcaaaatcagcattatattatcaatttctagactttattttttatcactcatcattctagtgcttgtatagtagatgccggatgccaccaacg...
species | Oryza sativa |
transcript | LOC_Os03g01750.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATEST: gi|2428616|gb|C73079.1|C73079
genomic: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
EST: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATEST: gi|88311093|gb|CI658006.1|CI658006
genomic: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
EST: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAATEST: gi|58690530|gb|CK079217.1|CK079217
genomic: TGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATACAAATATATAGTGGACGGCAAATGGGTGTGCAAT
EST: ACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCT GAAGGAAGGTATGAATACGAAGTATATAGTGGACGGCAAATGGGTGTGCAA
genomic: ACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatca ... tttcccgaagGAAGGAAGGTATGAATAC-AAATATATAGTGGACGGCAAATGGGTGTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAATTCCTTTGACATACAACAAGGAGAAAAGAGCTTGGTATCTTGAGAGGGAGTTGCCTgtgagtatcaaaatcagcattatattatcaatttctagactttattttttatcactcatcattctagtgcttgtatagtagatgccggatgccaccaacg
- - - - - - - - - - AAGGAG
- - - - - - - - - - - AGGAGA
- - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - GAGAGG