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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACGCATCTTTTGGTTATCCTGGAGGCCCCACCTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgctttgcttcactcatcttactaacaaagaatgatacctagtatttctgcacgatacatcttttttttggtctcatgtttgatctgttatttcag

Basic information

species Oryza sativa
transcript LOC_Os02g58020.3
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58020.3 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G013890_T01 (Zea mays), 5'ss of exon 12
TGACGCATCTTTTGGTTATCCTGGAGGCCCCACCTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatg----ttgctttgcttcactcatcttactaacaaagaatgatacctagtatttctgcacgatacatcttttttttggtctcatgtttgatc-tgttatttcag
||| || || |||||||| |||||||| || ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||     | ||||| | |||||||  || |   |  | ||  ||     |  || |  | | | ||  | ||   |  |   ||   | ||  | || ||||||
TGATGCCTCATTTGGTTACCCTGGAGGGCCTACCTTGTTTAAAAATTTGAATTTTGGTATCGACCTGGACAGCCGCATAGCAAgtatgatttcttctttgttccactcattgtagtcttactgcatattaatgtctggtttttgaagttgcagttcttccatttttaaatccctcattgtcttgtttcag

upper sequence: LOC_Os02g58020.3 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv02s0025g02160.t01 (Vitis vinifera), 5'ss of exon 12
TGACGCATCTTTTGGTTATCCTGGAGGCCCCACCTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatg--ttgctttgcttcactcatcttactaacaa-agaatgatacctagtatttctgcacgatacatcttttttttggtctcatgtttgatctgttatttcag
||| ||||| |||||||||||||| ||||||   |||||||| || ||||||||||| || || || ||||||||||| ||||||| |  ||| |||      ||||  || | |   | ||||| | |||      | |||   ||| | |  | | |   ||||||    ||  || |   | |  
TGATGCATCATTTGGTTATCCTGGGGGCCCCTTATTATTTAAGAATTTGAATTTTGGGATAGATCTAGACAGCCGCATTGCAAgtaagaattgttttttgaatctcaaatttccatttatagaataacaccattagatgctg---gatgc-ttatgtctcaagtctcaatactgcactttccctact-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58588466|gb|CF986774.1|CF986774
EST:     CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
EST: gi|218483226|gb|FG956166.1|FG956166
EST:     CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG