Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACGCATCTTTTGGTTATCCTGGAGGCCCCACCTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgctttgcttcactcatcttactaacaaagaatgatacctagtatttctgcacgatacatcttttttttggtctcatgtttgatctgttatttcag

Basic information

species Oryza sativa
transcript LOC_Os02g58020.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58020.3 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G013890_T01 (Zea mays), 5'ss of exon 12
TGACGCATCTTTTGGTTATCCTGGAGGCCCCACCTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatg----ttgctttgcttcactcatcttactaacaaagaatgatacctagtatttctgcacgatacatcttttttttggtctcatgtttgatc-tgttatttcag
||| || || |||||||| |||||||| || ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||     | ||||| | |||||||  || |   |  | ||  ||     |  || |  | | | ||  | ||   |  |   ||   | ||  | || ||||||
TGATGCCTCATTTGGTTACCCTGGAGGGCCTACCTTGTTTAAAAATTTGAATTTTGGTATCGACCTGGACAGCCGCATAGCAAgtatgatttcttctttgttccactcattgtagtcttactgcatattaatgtctggtttttgaagttgcagttcttccatttttaaatccctcattgtcttgtttcag

upper sequence: LOC_Os02g58020.3 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv02s0025g02160.t01 (Vitis vinifera), 5'ss of exon 12
TGACGCATCTTTTGGTTATCCTGGAGGCCCCACCTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatg--ttgctttgcttcactcatcttactaacaa-agaatgatacctagtatttctgcacgatacatcttttttttggtctcatgtttgatctgttatttcag
||| ||||| |||||||||||||| ||||||   |||||||| || ||||||||||| || || || ||||||||||| ||||||| |  ||| |||      ||||  || | |   | ||||| | |||      | |||   ||| | |  | | |   ||||||    ||  || |   | |  
TGATGCATCATTTGGTTATCCTGGGGGCCCCTTATTATTTAAGAATTTGAATTTTGGGATAGATCTAGACAGCCGCATTGCAAgtaagaattgttttttgaatctcaaatttccatttatagaataacaccattagatgctg---gatgc-ttatgtctcaagtctcaatactgcactttccctact-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|427530|gb|D23597.1|D23597
EST:     AAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: AAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
EST: gi|27576082|gb|CA998776.1|CA998776
EST:     CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
EST: gi|29623431|gb|CB628442.1|CB628442
EST:     TTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: TTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
EST: gi|3766930|gb|AU031040.1|AU031040
EST:     CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
EST: gi|29676044|gb|CB672319.1|CB672319
EST:     CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
EST: gi|27546087|gb|CA764161.2|CA764161
EST:     CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
EST: gi|29676045|gb|CB672320.1|CB672320
EST:     AAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: AAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
EST: gi|218495876|gb|FG947058.1|FG947058
EST:     CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
EST: gi|29664090|gb|CB660365.1|CB660365
EST:     CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
EST: gi|29662748|gb|CB659023.1|CB659023
EST:     CTTATNTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
EST: gi|218483226|gb|FG956166.1|FG956166
EST:     CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
EST: gi|29644367|gb|CB649374.1|CB649374
EST:     CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAA                         TGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG
genomic: CTTATTTAAAAACTTGAATTTTGGTATTGACCTGGACAGCCGCATAGCAAgtatgttgct ... gttatttcagTGGTTGGTCCAAATGGTATTGGCAAATCCACTATACTTAAACTAATATCTG