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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGGTTTTGATGGTACAGATACGCATTACTTTCATAGTGGTTCACGCGGCCATCATTGGATGTGGGATTCTCGCCTTTTCAACTATGGGAATTGGGAAgtaaggaacacgttaatcgctacttccctttacaaagtatcattattcatatgcattaatctctattgtgtttgccaacatttttatccttatacag

Basic information

species Oryza sativa
transcript LOC_Os02g32660.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G032628_T01 (Zea mays), 5'ss of exon 12
GAACGGTTTTGATGGTACAGATACGCATTACTTTCATAGTGGTTCACGCGGCCATCATTGGATGTGGGATTCTCGCCTTTTCAACTATGGGAATTGGGAAgtaaggaacacgttaatcgctacttccctttacaaagtatcattattcatatgcattaatctctattgtgtttgccaacatttttatccttatacag
||| |||||||||||||||||||| ||||||||||| |||||| |||| |||||||| |||||||||||||||||||| || ||||||||||| ||||||||| ||||||    |  | |||  ||| ||     | | | |||  || |||   |    || ||| |    | |||||| |||||||| ||| |||
GAATGGTTTTGATGGTACAGATACACATTACTTTCACAGTGGTCCACGTGGCCATCACTGGATGTGGGATTCTCGCCTATTTAACTATGGGAACTGGGAAgtacggaacaaaa-atgctctatctccatt-----aattttatt-ctcctatttttctgcctgtatcg----ttccaacaattttatccgtatgcag

upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA19G37750.2 (Glycine max), 5'ss of exon 12
GAACGGTTTTGATGGTACAGATACGCATTACTTTCATAGTGGTTCACGCGGCCATCATTGGATGTGGGATTCTCGCCTTTTCAACTATGGGAATTGGGAAgtaaggaacacgttaatcgctacttccctttacaaagtatc-----attattcatatgcattaatctctattgtgtttgccaacatttttatcctta-tacag
||||   |||||||| || |||   |||||||| |||  ||| ||||| ||  |||||||||||||||||||||||||||| |||||||| |  |||||||||||       |    |      | | ||  || ||||||     |  |||  ||| | ||    || |  ||   || |   | ||| || |||| |  ||
GAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGGTCACGAGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGAAGCTGGGAAgtaagtgctggct---ccaaagaattcattggcatagtatctgaaaaaaatttctataccttctgttcaacagtaaatgact-tactttaattcttaatttag

upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 12
GAACGGTTTTGATGGTACAGATACGCATTACTTTCATAGTGGTTCACGCGGCCATCATTGGATGTGGGATTCTCGCCTTTTCAACTATGGGAATTGGGAAgtaaggaaca-cgttaatcgctacttccctttacaaagtatcattattcat-atgcattaatctctattgtgtttgccaacatttttatcctta-tacag
||||   |||||||| || |||   |||||||| |||  ||| ||||| ||  |||||||||||||||||||||||||||| ||||| || |  |||||||||||      |   ||    | | |     ||     |  ||  |||     | | ||    || |  ||   || |   | ||| || |||| |  ||
GAACATGTTTGATGGAACTGATGGTCATTACTTCCATCCTGGGTCACGAGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTACGGAAGCTGGGAAgtaagtgctggctccaaagaattcattggcatagtttctgacaaaattttccgtaccttctgttcaacagtaagtgact-tactttaattcttaatttag

upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 12
lower sequence: AT2G36390.1 (Arabidopsis thaliana), 5'ss of exon 12
GAACGGTTTTGATGGTACAGATACGCATTACTTTCATAGTGGTTCACGCGGCCATCATTGGATGTGGGATTCTCGCCTTTTCAACTATGGGAATTGGGAAgtaaggaacacgtt----aatcgctacttccctttacaaagtatcattattcatatgcattaatctctattgtgtttgccaacatttttatccttatacag-----------------
| ||   ||||||||||| |||   || || || ||   ||| || || ||  |||||||||||||||||||||| |||||||| || || |  ||||||||| |   |         | | | || | |  | |  |  | |      ||  | |      ||     | ||  |  |      || | |  | |                      
GGACATGTTTGATGGTACTGATGGTCAATATTTCCACTCTGGATCGCGTGGTTATCATTGGATGTGGGATTCTCGTCTTTTCAATTACGGAAGCTGGGAAgtatgtctctttccgtagagttgatattgcaatatttatgggaaagcctttagtgtagccccatgctggtggttatgtctggtccttgtgtattgacgtttggtccttgtgtatttag

upper sequence: LOC_Os02g32660.1 (Oryza sativa), 5'ss of exon 12
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 12
GAACGGTTTTGATGGTACAGATACGCATTACTTTCATAGTGGTTCACGCGGCCATCATTGGATGTGGGATTCTCGCCTTTTCAACTATGGGAATTGGGAAgtaaggaacacgttaatcgctacttccctttacaaagta-tcattattcatatgcattaatctctattgtgtttgccaacat-ttttatccttatacag---
||||   |||||||| || ||| | || || |||||   |||  | || ||  | ||||||||||||||||| || |||||||| |||||||  ||||||||| | |||   ||  |    | ||   |  | || ||| | |  || ||  | | |||| | ||||    |    ||   | ||||   ||| |  |    
GAACATGTTTGATGGAACTGATGCTCACTATTTTCACTCTGGACCTCGGGGATACCATTGGATGTGGGATTCACGACTTTTCAATTATGGGAGCTGGGAAgtatgtaactttttcgtga--attttaatcgaaaatgtagtgaacatacaacttccttaagcactatcagttccaacagtctcttttgatcttttctaacag