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GTTTGGCAAAGTTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAGgttaacatctcatttgtttgtgtgtttgttggttttttagtgctgcaaaagataagcaggcatctctgctgccacccttctactgggagcagaaacatat...
species | Oryza sativa |
transcript | LOC_Os02g18820.2 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAG TTCTCACCCACTTCAGAGCACATACTATTGGCATATGGTCGTCGTCATAACEST: gi|58679543|gb|CK068230.1|CK068230
genomic: TTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAGgttaacatct ... ttttctgcagTTCTCACCCACTTCAGAGCACATACTATTGGCATATGGTCGTCGTCATAAC
EST: TTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAG TTCTCACCCACTTCAGAGCACATACTATTGGEST: gi|33799429|gb|CF325571.1|CF325571
genomic: TTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAGgttaacatct ... ttttctgcagTTCTCACCCACTTCAGAGCACATACTATTGG
EST: TTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAG TTCTCACCCACTTCAGAGCACATACTATTGGCATATGGTCGTCGTCATAACEST: gi|29674171|gb|CB670446.1|CB670446
genomic: TTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAGgttaacatct ... ttttctgcagTTCTCACCCACTTCAGAGCACATACTATTGGCATATGGTCGTCGTCATAAC
EST: TTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAG TTCTCACCCACTTCAGAGCACATACTATTGGCATATGGTCGTCGTCATAACEST: gi|58658966|gb|CK047646.1|CK047646
genomic: TTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAGgttaacatct ... ttttctgcagTTCTCACCCACTTCAGAGCACATACTATTGGCATATGGTCGTCGTCATAAC
EST: TTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAG TTCTCACCCACTTCAGAGCACATACTATTGGCATATGGTCGTCGTCATAACEST: gi|58592710|gb|CF991018.1|CF991018
genomic: TTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAGgttaacatct ... ttttctgcagTTCTCACCCACTTCAGAGCACATACTATTGGCATATGGTCGTCGTCATAAC
EST: TTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAG TTCTCACCCACTTCAGAGCACATACTATTGGCATATGGTCGTCGTCATAAC
genomic: TTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAGgttaacatct ... ttttctgcagTTCTCACCCACTTCAGAGCACATACTATTGGCATATGGTCGTCGTCATAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTGGCAAAGTTCTTACATCAAGAGCGATAAGGGCAGCTCATTGCTTAACTTCCATCCAGgttaacatctcatttgtttgtgtgtttgttggttttttagtgctgcaaaagataagcaggcatctctgctgccacccttctactgggagcagaaacatat
- - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - AGCTCA
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