Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag

Basic information

species Oryza sativa
transcript LOC_Os02g13580.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G062034_T01 (Zea mays), 5'ss of exon 5
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtc-actatgtgtttacaacgatctgtttctatcaatttctcag
 ||||| || || | |||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| | || ||||||   |||||||       | |||    |   | ||| ||| | | ||  |      ||||| || |||  |  |  || | |||||||  |  |||||| || |||| |||||
TTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACATACAATGgta---tgaagct----atcagaac---cgaaatatttttttaaatatgttt------agattcctttacgatggaggatatatttacaataacttgtttcaatgaattgctcag

upper sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag
 ||||||||||  || ||| | ||| |||| ||||||||||| |||||||| || || || || ||||| |||||||| || ||||| ||||| || |||||| ||   |  || |   ||     |||    ||  ||| |    |    | |      | | || | |    |                                       
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag--------------------------------------

upper sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
lower sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag
 ||    || ||| | || || ||| ||||||||||||| || |||||||| || || || |||||||| || || |||||||| ||||| ||||| ||||||| |      |||             | || | |     | |  | ||  | || | |||  | ||||| ||   ||    |||  |   | | | || |            
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactc----attca------------ctagtatatcacgattaagtggccagacaaatgatgccactacattc---ataccattatcattgtttttgtccag-----------

upper sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 5'ss of exon 13
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag
 ||    ||||  || ||  |  |  |||| |||||||||||||| ||||| || || || || ||||| |||||||| || || || |||||||| ||||||   ||||  |    | | |    ||| ||||   |      |  |  |||     |   || || | |   |||   ||| ||      | | ||||    |         
GTTTTCTGACACTCAACCCTTGGTACGATCTGTTCTTGATGGCTATAATGTATGTATATTTGCTTATGGTCAAACTGGTTCGGGCAAGACATACACAATGgta---tgaactt----gtatatgt-tttagtctacatg-----gcatatgtgttgata---ttttcaataaaaact---tgtgtaatgtattgtctttcctctag--------

upper sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcacta-tgtgtttacaacgatctgtttctatcaatttctcag
 ||    ||||  || ||| ||||| |||| || |||||||| ||||||||||| || || || ||||| |||||||| || |||||||| || ||||||||| |                            |    | || | ||| | | ||| || || | | || ||  | || | | | |||  |   ||||| || |   ||   |||
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatg----------------------------tacccactttatttttcat-ccaaaaaatatgt-taaagagattactatttgtacttcacactgttccttttgtttctccag

upper sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
lower sequence: EFJ12333 (Selaginella moellendorffii), 5'ss of exon 9
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgc-tgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag
 |||  ||| |  |||||| | ||  | |||||||||||||| ||||| || || ||||| || ||||| ||||| || || |||||||| ||||| ||||||    |||         ||| |||||      | |||    |  |||||    |||                                                         
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtatttatgacatattatacaacaacat------tatttgcaactatttgctgtacag---------------------------------------------------------

upper sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
lower sequence: EFJ19920 (Selaginella moellendorffii), 5'ss of exon 9
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctgaagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag
 |||  ||| |  |||||| | ||  | |||||||||||||| ||||| || || ||||| || ||||| ||||| || || |||||||| ||||| ||||||         | | | || ||  ||         ||||||     |   |||   |                                                        
ATTCCTGGATACTCAGCCATTGATACGGTCAGTTCTTGATGGTTACAACGTGTGTATTTTTGCGTATGGTCAAACAGGCTCGGGAAAAACGTACACCATGgtat--------ttatgacataattatacaacaacattatttgcaactatttgctgtacag-----------------------------------------------------

upper sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
lower sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctg-aagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag
 ||   |||    |||||  | ||| |||| || |||||||| | ||| ||||| ||||| || ||||| || ||||| || ||||||||||| ||||||||| ||||  |||||    |   |  ||||| | | || |  ||  ||   |                                                               
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctc----cgttaggatttg-tgtattaacgtctattgatgcag------------------------------------------------------------

upper sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
lower sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctg-aagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag
 ||   |||    |||||  | ||| |||| || |||||||| | ||| ||||| ||||| || ||||| || ||||| || ||||||||||| ||||||||| | ||  |||||    |   || ||||| | | || |  ||  ||   |                                                               
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtgagctc----cgttaagatttg-tgtattaacgtctattgatgcag------------------------------------------------------------