1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGgtttgttggtaatataattgtaagatctgaaatttacctttggttgctgccaaaacctgatgattccctctcttcaatatag
species | Oryza sativa |
transcript | LOC_Os02g04020.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAG ACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGAEST: gi|58591675|gb|CF989983.1|CF989983
genomic: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGgtttgttggt ... ttcaatatagACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGA
EST: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAG ACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGAEST: gi|88458341|gb|CI695727.1|CI695727
genomic: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGgtttgttggt ... ttcaatatagACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGA
EST: ATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAG ACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGAEST: gi|58587946|gb|CF986254.1|CF986254
genomic: ATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGgtttgttggt ... ttcaatatagACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGA
EST: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAG ACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGAEST: gi|29640360|gb|CB645369.1|CB645369
genomic: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGgtttgttggt ... ttcaatatagACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGA
EST: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAG ACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGAEST: gi|58663368|gb|CK052054.1|CK052054
genomic: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGgtttgttggt ... ttcaatatagACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGA
EST: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAG ACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGAEST: gi|29625319|gb|CB630330.1|CB630330
genomic: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGgtttgttggt ... ttcaatatagACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGA
EST: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAG ACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGAEST: gi|58677461|gb|CK066148.1|CK066148
genomic: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGgtttgttggt ... ttcaatatagACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGA
EST: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAG ACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGA
genomic: TGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGgtttgttggt ... ttcaatatagACTCTTCTTTGACAAGCACAGAAAGTTCATCCAATGGCTCTTTGGACCGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTACTCGCATGCCTGAATACGATGTTCCTGTCGTCGATAAGGCTGTAGATGCAACATGGAAGAGAGAAGTGACTCGAAAGACTGCCTTCTCATCCAAAGgtttgttggtaatataattgtaagatctgaaatttacctttggttgctgccaaaacctgatgattccctctcttcaatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT