1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
ATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGgtgagttacccagcaatttaattacccttgtttgaagagatatcattgacagatacagcatttcagttaagtttgttaaccagacggtggtgtttgttgc...
species | Oryza sativa |
transcript | LOC_Os01g74460.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATG TTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCEST: gi|86486002|gb|CI128635.1|CI128635
genomic: TAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGgtgagttacc ... tttgttgcagTTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATC
EST: TTCAGAAGAGATGAAGATTATG TTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTCTTAATCEST: gi|87029236|gb|CI276504.1|CI276504
genomic: TTCAGAAGAGATGAAGATTATGgtgagttacc ... tttgttgcagTTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATC
EST: TAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATG TTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATCEST: gi|86861206|gb|CI326645.1|CI326645
genomic: TAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGgtgagttacc ... tttgttgcagTTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATC
EST: TAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATG TTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACCCCGCTTTTAATC
genomic: TAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGgtgagttacc ... tttgttgcagTTCTGTTCTGCTGGATAACCCAGGATTTTGAGTTGTACGCCGCTTTTAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTACAAAGCTTATCAAAAATTGTATGCTTCCATGCATGATAAAGCAACTGGTCCACATAAAACCCAATTCAGAAGAGATGAAGATTATGgtgagttacccagcaatttaattacccttgtttgaagagatatcattgacagatacagcatttcagttaagtttgttaaccagacggtggtgtttgttgc
- - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA