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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATCGCCTGGACAAAGCTTTTGCGGTTATAGATATTATGAACAGTGCTTTGTTGCTTGTGGTCCAAAATAATGAGACAGACCATATTAACATCTTAAAGgtgattactttcacatgagtgcaattggcacttatggtacaagccataattggtagtgtatgtagcagtttcctccttaaaacttaagtgtttttcccgg...

Basic information

species Oryza sativa
transcript LOC_Os01g74310.4
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g74310.5 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G459642_T02 (Zea mays), 5'ss of exon 5
ACATCGCCTGGACAAAGCTTTTGCGGTTATAGATATTATGAACAGTGCTTTGTTGCTTGTGGTCCAAAATAATGAGACAGACCATATTAACATCTTAAAGgtgatt-actttcacatgagtgcaattggcacttatggtacaagccataattggtagtgtatgtagcagtttcctccttaaaacttaagtgtt--tttcccgg--
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AAATTGTCTTGATAAAGCTTTTGCGGTTATAGATATTATGAATAGTGCTTTGTTACTTGTTGTTCAAAACAATGAGACGGACCATATCAACATATTAAAGgtaattcataattgtcttattgtctttaga--ttttggtgta---cacatctgcatacatacaagtcagcatcatttacaaatgatatctgttgccttacaagtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29640959|gb|CB645966.1|CB645966
EST:     TGTTGCTTGTGGTCCAAAATAATGAGACAGACCATATTAACATCTTAAAG                         ATGTGTGATATGTTGTTTTCTCAATTATGTCTGAGACTGCCATCTTCAAAT
genomic: TGTTGCTTGTGGTCCAAAATAATGAGACAGACCATATTAACATCTTAAAGgtgattactt ... cctcatgcagATGTGTGATATGTTGTTTTCTCAATTATGTCTGAGACTGCCATCTTCAAAT