Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGTTCCTGAGGAATTTGTTCTGCAGTACCCTTCCAATGGAAATCCCCCAACCTTATTTCTTGCACTGCGTGgtgagacaatgctttcttccttgctcttcactgtcatgacacattaaatgcagtatagcagtactgttgagaatcaaagtatctaaattatctgacttga...

Basic information

species Oryza sativa
transcript LOC_Os01g69210.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g69210.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G126468_T01 (Zea mays), 5'ss of exon 12
TAAAGTTCCTGAGGAATTTGTTCTGCAGTACCCTTCCAATGGAAATCCCCCAACCTTATTTCTTGCACTGCGTGgtgagacaatgctttcttccttgctcttcactgtcatgacacattaaatgcagtatagcagtactgttgagaatcaaagtatctaaattatctgacttga---
||||||||| ||||| |||||||||||||| ||||||||||||||||| || || |||||||||||  | |||||| || || | ||||||| ||||||| ||||  | ||| |   |    |||  |||   | |  |  |     ||  | ||| ||   || ||  | ||    
TAAAGTTCCCGAGGAGTTTGTTCTGCAGTATCCTTCCAATGGAAATCCTCCTACTTTATTTCTTGCGATACGTGgtaagccattactttctttcttgctcctcacgttgatgtcgtgtc--ttgcgatatctaattctttgtttttctctga-tatttagtgtaacttgcatgcatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58654568|gb|CK043248.1|CK043248
EST:     GCAGTACCCTTCCAATGGAAATCCCCCAACCTTATTTCTTGCACGGGGTG                         ATTTGGCAAGTGGAATACATGCAAACCAGTTTTCAGATGAGGAATCTGAAA
genomic: GCAGTACCCTTCCAATGGAAATCCCCCAACCTTATTTCTTGCACTGCGTGgtgagacaat ... tttggtacagATTTGGCAAGTGGAATACATGCAAACCAGTTTTCAGATGAGGAATCTGAAA
EST: gi|58672225|gb|CK060911.1|CK060911
EST:     GCAGTACCCTTCCAATGGAAATCCCCCAACCTTATTTCTTGCACTGCGTG                         ATTTGGCAAGTGGAATACATGCAAACCAGTTTTCAGATGAGGAATCTGAAA
genomic: GCAGTACCCTTCCAATGGAAATCCCCCAACCTTATTTCTTGCACTGCGTGgtgagacaat ... tttggtacagATTTGGCAAGTGGAATACATGCAAACCAGTTTTCAGATGAGGAATCTGAAA