1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGGAAGATGATCAATCGGCAACGCTTGACCAAGTCTTGAATGATACGACGAGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAAgttagttgattttgcttgctgtttaccacgcgtctaagtgttttctgctaaaaatcaactaatgcaactaactgtatgatgcag
species | Oryza sativa |
transcript | LOC_Os01g67220.3 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAA GGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTTEST: gi|3761659|gb|C98907.1|C98907
genomic: AGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAAgttagttgat ... tatgatgcagGGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTT
EST: AGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAA GGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTTEST: gi|88491677|gb|CI428949.1|CI428949
genomic: AGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAAgttagttgat ... tatgatgcagGGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTT
EST: AAAGGATACCTCGCGTCAGTTGCACAAGCAATCAA GGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTTEST: gi|88428839|gb|CI554555.1|CI554555
genomic: AAAGGATACCTCGCGTCAGTTGCACAAGCAATCAAgttagttgat ... tatgatgcagGGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTT
EST: ACCTCGCGTCAGTTGCACAAGCAATCAA GGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTTEST: gi|58672934|gb|CK061620.1|CK061620
genomic: ACCTCGCGTCAGTTGCACAAGCAATCAAgttagttgat ... tatgatgcagGGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTT
EST: AGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAA GGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTTEST: gi|88994486|gb|CI117638.1|CI117638
genomic: AGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAAgttagttgat ... tatgatgcagGGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTT
EST: AGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAA GGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTTEST: gi|29625132|gb|CB630143.1|CB630143
genomic: AGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAAgttagttgat ... tatgatgcagGGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTT
EST: AGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAA GGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTTEST: gi|25806962|gb|CA762923.1|CA762923
genomic: AGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAAgttagttgat ... tatgatgcagGGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTT
EST: AGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAA GGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTTEST: gi|88508596|gb|CI436102.1|CI436102
genomic: AGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAAgttagttgat ... tatgatgcagGGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTT
EST: AAAGGATACCTCGCGTCAGTGGCACAAGCAATCAA GGAGGGTGCTGATGTTCGTGGGTACTTCGCATGTTCGTTCCTGGACAACTT
genomic: AAAGGATACCTCGCGTCAGTTGCACAAGCAATCAAgttagttgat ... tatgatgcagGGATGGTGCTGATGTTCGTGGGTACTTCGCATGGTCGTTCCTGGACAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAAGATGATCAATCGGCAACGCTTGACCAAGTCTTGAATGATACGACGAGGGTTGGTTACTTCAAAGGATACCTCGCGTCAGTTGCACAAGCAATCAAgttagttgattttgcttgctgtttaccacgcgtctaagtgttttctgctaaaaatcaactaatgcaactaactgtatgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA