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GTATACCAAATTAGCCGAGTTAAAAAATGACAAAGCTATCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACGgtactcaacagtttgtgcacaatggcctttttttaacccctttttttcactaaacagcggtttacttttgcag
species | Oryza sativa |
transcript | LOC_Os01g56630.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACG TCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCEST: gi|426809|gb|D22882.1|D22882
genomic: TCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACGgtactcaaca ... acttttgcagTCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATC
EST: TCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACG TCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCEST: gi|58678344|gb|CK067031.1|CK067031
genomic: TCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACGgtactcaaca ... acttttgcagTCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATC
EST: TCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACG TCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCEST: gi|29639051|gb|CB644060.1|CB644060
genomic: TCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACGgtactcaaca ... acttttgcagTCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATC
EST: TCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACG TCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATC
genomic: TCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACGgtactcaaca ... acttttgcagTCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATACCAAATTAGCCGAGTTAAAAAATGACAAAGCTATCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACGgtactcaacagtttgtgcacaatggcctttttttaacccctttttttcactaaacagcggtttacttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG