1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AGAAAGGCCCACACAATCAAGAGTTGTTATTTTGTTCAGGGATAGACCATCCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAGgtacttgcagtattacgttattcaattaaaattcataggtttctacctctacatacttctaataaactgactttactaatctatcgatgtatag
species | Oryza sativa |
transcript | LOC_Os01g54784.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAG GCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAAEST: gi|29643216|gb|CB648223.1|CB648223
genomic: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAGgtacttgcag ... cgatgtatagGCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAA
EST: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAG GCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAAEST: gi|58692115|gb|CK080802.1|CK080802
genomic: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAGgtacttgcag ... cgatgtatagGCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAA
EST: CCCCTACACAGGATCCACAATGGAGGACTGNCGTTACATCCTCTAACAAG GCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAAEST: gi|58608266|gb|CK036299.1|CK036299
genomic: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAGgtacttgcag ... cgatgtatagGCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAA
EST: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAG GCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAAEST: gi|88510496|gb|CI438002.1|CI438002
genomic: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAGgtacttgcag ... cgatgtatagGCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAA
EST: TGCCGTTACATCCTCTAACAAG GCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAAEST: gi|88223323|gb|CI223172.1|CI223172
genomic: TGCCGTTACATCCTCTAACAAGgtacttgcag ... cgatgtatagGCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAA
EST: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAG GCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAAEST: gi|88486816|gb|CI424087.1|CI424087
genomic: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAGgtacttgcag ... cgatgtatagGCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAA
EST: AGGACTGCCGTTACATCCTCTAACAAG GCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAAEST: gi|29640875|gb|CB645882.1|CB645882
genomic: AGGACTGCCGTTACATCCTCTAACAAGgtacttgcag ... cgatgtatagGCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAA
EST: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAG GCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAAEST: gi|87021846|gb|CI278013.1|CI278013
genomic: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAGgtacttgcag ... cgatgtatagGCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAA
EST: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAG GCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAAEST: gi|396941229|gb|HO188438.1|HO188438
genomic: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAGgtacttgcag ... cgatgtatagGCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAA
EST: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAG GCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAA
genomic: CCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAGgtacttgcag ... cgatgtatagGCCCTCAAGTCAAGCCCTATTTAACCAGAAGACAAACCGTTGATGTGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAGGCCCACACAATCAAGAGTTGTTATTTTGTTCAGGGATAGACCATCCCCTACACAGGATCCACAATGGAGGACTGCCGTTACATCCTCTAACAAGgtacttgcagtattacgttattcaattaaaattcataggtttctacctctacatacttctaataaactgactttactaatctatcgatgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA