1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACACAAAAACTAATGACAGTTGTTGATGAGCAATTAAAATCATCATATTCCAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGgtaagaaacatcaatatgtttctcatggagaactgaaatcttcagcttaatgtttattttaaaattatattgcttcaaatatctggtgacacgcttcata...
species | Oryza sativa |
transcript | LOC_Os01g53600.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTG AAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACCEST: gi|22306108|gb|BQ907330.1|BQ907330
genomic: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGgtaagaaaca ... tttttggcagAAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACC
EST: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTG AAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACCEST: gi|29674619|gb|CB670894.1|CB670894
genomic: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGgtaagaaaca ... tttttggcagAAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACC
EST: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTG AAGCAGCATATTATGCTAAGTTTGGATTTGATTTEST: gi|29645257|gb|CB650264.1|CB650264
genomic: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGgtaagaaaca ... tttttggcagAAGCAGCATATTATGCTAAGTTTGGATTTGATTT
EST: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTG AAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACCEST: gi|29674661|gb|CB670936.1|CB670936
genomic: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGgtaagaaaca ... tttttggcagAAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACC
EST: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTG AAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACCEST: gi|86489887|gb|CI132520.1|CI132520
genomic: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGgtaagaaaca ... tttttggcagAAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACC
EST: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTG AAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACCEST: gi|29674620|gb|CB670895.1|CB670895
genomic: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGgtaagaaaca ... tttttggcagAAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACC
EST: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTG AAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACCEST: gi|29645420|gb|CB650427.1|CB650427
genomic: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGgtaagaaaca ... tttttggcagAAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACC
EST: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTG AAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACCEST: gi|29640149|gb|CB645158.1|CB645158
genomic: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGgtaagaaaca ... tttttggcagAAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACC
EST: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTG AAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACCEST: gi|29661886|gb|CB658161.1|CB658161
genomic: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGgtaagaaaca ... tttttggcagAAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACC
EST: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTG AAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACC
genomic: CAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGgtaagaaaca ... tttttggcagAAGCAGCATATTATGCTAAGTTTGGATTTGATTTTATAGAGAAGAGCAACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACAAAAACTAATGACAGTTGTTGATGAGCAATTAAAATCATCATATTCCAGCAAAAGGCCTCCAGGAGATGATGCTTGTGGTACGAGCTCTTCTACTGgtaagaaacatcaatatgtttctcatggagaactgaaatcttcagcttaatgtttattttaaaattatattgcttcaaatatctggtgacacgcttcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG