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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCCAAGCTAAAATTGCATCTGGGGGTTTCATAAAGAGTACATTGTTCAATCTTGCTTACAAATTgtaagtttactactctttgtactctgaatgtttgccttttggggaatagaaaatgtggaatagttgtttgcacttttaatattataggtccaatgtttct...

Basic information

species Oryza sativa
transcript LOC_Os01g46750.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46750.4 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM5G861300_T01 (Zea mays), 5'ss of exon 12
GACTCCAAGCTAAAATTGCATCTGGGGGTTTCATAAAGAGTACATTGTTCAATCTTGCTTACAAATTgtaagtttactactctttgtactctgaatgtttgccttttggggaatagaaaatgtgga-atagttgtttgcactttt--aatattataggtc-caatgtttct-----
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GGCTACAAGCTAAAATTTCCTCTGGTGGGTTTTTAAAGAGTACAGTGTTTAATCTTGCTTACAGATTgtaagttttctgttccaaatattctaaaatcaatatttctcctgagtgtgctatgtacctgcagttactcacattttacaagtgtttaagttcacattgtattttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29673146|gb|CB669421.1|CB669421
EST:     GCATCTGGGGGTTTCATAAAGAGTACATTGTTCAATCTTGCTTACAAATT                         CAAGCAATTTAGAATGATGAAAGGAGCTAAGCACAATGAAGCTGCCGCAAT
genomic: GCATCTGGGGGTTTCATAAAGAGTACATTGTTCAATCTTGCTTACAAATTgtaagtttac ... tattttgcagCAAGCAATTTAGAATGATGAAAGGAGCTAAGCACAATGAAGCTGCCGCAAT
EST: gi|58672830|gb|CK061516.1|CK061516
EST:     GCATCTGGGGGTTTCATAAAGAGTACATTGTTCAATCTTGCTTACAAATT                         CAAGCAATTTAGAATGATGAAAGGAGCTAAGCACAATGAAGCTGCCGCAAT
genomic: GCATCTGGGGGTTTCATAAAGAGTACATTGTTCAATCTTGCTTACAAATTgtaagtttac ... tattttgcagCAAGCAATTTAGAATGATGAAAGGAGCTAAGCACAATGAAGCTGCCGCAAT
EST: gi|29618098|gb|CB623110.1|CB623110
EST:     GCATCTGGGGGTTTCATAAAGAGTACATTGTTCAATCTTGCTTACAAATT                         CAAGCAATTTAGAATGATGAAAGGAGCTAAGCACAATGAAGCTGCCGCAAT
genomic: GCATCTGGGGGTTTCATAAAGAGTACATTGTTCAATCTTGCTTACAAATTgtaagtttac ... tattttgcagCAAGCAATTTAGAATGATGAAAGGAGCTAAGCACAATGAAGCTGCCGCAAT