1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CAGGTGGACACCAGATGAAATTAAAGCTGCTACTGGGAATGAAGATTGCACCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgctaacttcacatggctagctacaatttctccatcaatctttgatgtgagaaatcaacatgtttcaccactcatctttatttagatatatcaga...
species | Oryza sativa |
transcript | LOC_Os01g42490.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|86480117|gb|CI122750.1|CI122750
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|87027334|gb|CI270009.1|CI270009
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|29624406|gb|CB629417.1|CB629417
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|86858239|gb|CI271125.1|CI271125
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|2800930|gb|AA754224.1|AA754224
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|29624470|gb|CB629481.1|CB629481
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|87013807|gb|CI271198.1|CI271198
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|58690956|gb|CK079643.1|CK079643
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|29624531|gb|CB629542.1|CB629542
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|58677956|gb|CK066643.1|CK066643
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|86480856|gb|CI123489.1|CI123489
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|29635013|gb|CB640022.1|CB640022
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTACEST: gi|29637193|gb|CB642202.1|CB642202
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
EST: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAG GATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
genomic: CCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgcta ... gttcaaccagGATTTTGAAGGGACAAAAGATGCCAACAAGGAGCCTCTAGTAACAAGTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGTGGACACCAGATGAAATTAAAGCTGCTACTGGGAATGAAGATTGCACCTTCGTGGAACATAATTTGAAAGTCCGAAGTGTCTACACAGATGTGGAGgtaaccgctaacttcacatggctagctacaatttctccatcaatctttgatgtgagaaatcaacatgtttcaccactcatctttatttagatatatcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG