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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGATTCCCAAAATTGGGAATATTGGTCACATGACAAGAATAACCAACAAGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttcctttctttccattgactcaacagtctttaattttttgaactatgaagtacctgagttctctgctcactgtctcgaattattttttaacaatag

Basic information

species Oryza sativa
transcript LOC_Os01g40340.3
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g40340.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G149321_T01 (Zea mays), 5'ss of exon 5
ATCGATTCCCAAAATTGGGAATATTGGTCACATGACAAGAATAACCAACAAGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttcctttctt---tccattgactcaacagtctttaattttttgaactatgaagtacctgagttctctgctcactgtctcgaattattttttaacaatag
| |   ||| | |||||| ||| |||||||||||||||||||| |||| || |||||||||||||| |  ||||||  ||||||||||  |||||| |||||    |||||||| |    ||  ||| || |  |||   |  |||| ||     |   ||   ||  |  |    |   | |                       
AACCCCTCCAAGAATTGGAAATGTTGGTCACATGACAAGAATAGCCAATAAACTTATTCAGTTGGGCAATAGTAACAACACAATCCAGGCTCACTTACAGgttcgctttcctttgtcaaatcttttggcttacgagtgcctggttttctgctgactattgtgtttggttgtttcttttgttttaatag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58679221|gb|CK067908.1|CK067908
EST:     AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG                         GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
EST: gi|29680806|gb|CB677081.1|CB677081
EST:     AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG                         GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
EST: gi|29612947|gb|CB617960.1|CB617960
EST:     AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG                         GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
EST: gi|24208348|gb|AU225375.1|AU225375
EST:     AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG                         GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
EST: gi|88717309|gb|CI740819.1|CI740819
EST:     AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG                         GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
EST: gi|58689270|gb|CK077957.1|CK077957
EST:     AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAG                         GAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT
genomic: AGCTTATTCAGTTGGGAAGCAGTAACGGCACAATCCAGATTCACTTGCAGgtgatatttc ... ttaacaatagGAAAATAGTGAGTGGGTTGACTGGCAAACAGATGTTCTAGTCAAGCGTAAT