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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCTGCAATAACCACCATTGGATTTGTCAAAGGCGCCCCAGAAATTGATGTACAAGGCTTTAATGTGTACCACAAGAATCGTTTAATAGCGgtgaggactttcttctttgcatgactcatgatagatactgtttaatttgcttttctttctattgctctcccagcatgtcactaagagttcatgtgctatt...

Basic information

species Oryza sativa
transcript LOC_Os01g36840.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g36840.2 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G030596_T02 (Zea mays), 5'ss of exon 12
CTATCTGCAATAACCACCATTGGATTTGTCAAAGGCGCCCCAGAAATTGATGTACAAGGCTTTAATGTGTACCACAAGAATCGTTTAATAGCGgtgaggactttcttctttgcatgactcatgatagatactgt-ttaatttgcttttctttc-tattgctctcc-cagcatgtcactaagagttcatgtgctatt
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TCATCGGTAATCACAACCATTGGGTTTGTTAAAGGTGCACCAGATATAGATGTACAAGGGTTTAATGTATATCACAAAAACCGTCTAATATTGgtaagagct--ctgctttgtatactacatggtgcatgatgtatcaattcacttttctttcctgttgctgtctgttgccagttgggctgtaatcgtttgaagc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86905480|gb|CI285443.1|CI285443
EST:     AAATTGATGTACAAGGCTTTAATGTGTACCACAAGAATCGTTTAATAGCG                         CCATTTCGGACAGTTGCGAACAACTCATAT
genomic: AAATTGATGTACAAGGCTTTAATGTGTACCACAAGAATCGTTTAATAGCGgtgaggactt ... ttttcggcagCCATTTTGGAAAGTTGCGAACAACTCATAT
EST: gi|11171117|gb|AU163632.1|AU163632
EST:     AAATTGATGTACAAGGCTTTAATGTGTACCACAAGAATCGTTTAATAGCG                         CCATTTTGGAAAGTTGCGAACAACTCATATGGCAAAGGGCGAGGAGTTGTG
genomic: AAATTGATGTACAAGGCTTTAATGTGTACCACAAGAATCGTTTAATAGCGgtgaggactt ... ttttcggcagCCATTTTGGAAAGTTGCGAACAACTCATATGGCAAAGGGCGAGGAGTTGTG
EST: gi|116875003|gb|EC365511.1|EC365511
EST:     CCACAAGAATCGTTTAATAGCG                         CCATTTTGGAAAGTTGCGAACAACTCATATGGCAAAGGGCGAGGAGTTGTG
genomic: CCACAAGAATCGTTTAATAGCGgtgaggactt ... ttttcggcagCCATTTTGGAAAGTTGCGAACAACTCATATGGCAAAGGGCGAGGAGTTGTG
EST: gi|116874995|gb|EC365503.1|EC365503
EST:     CACAAGAATCGTTTAATAGCG                         CCATTTTGGAAAGTTGCGAACAACTCATATGGCAAAGGGCGAGGAGTTGTG
genomic: CACAAGAATCGTTTAATAGCGgtgaggactt ... ttttcggcagCCATTTTGGAAAGTTGCGAACAACTCATATGGCAAAGGGCGAGGAGTTGTG
EST: gi|116875534|gb|EC366042.1|EC366042
EST:     CCACAAGAATCGTTTAATAGCG                         CCATTTTGGAAAGTTGCGAACAACTCATATGGCAAAGGGCGAGGAGTTGTG
genomic: CCACAAGAATCGTTTAATAGCGgtgaggactt ... ttttcggcagCCATTTTGGAAAGTTGCGAACAACTCATATGGCAAAGGGCGAGGAGTTGTG