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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGTCTTCAAAATTCTTGATCGTAAATCCAAGATTGATTCGAGCAATGATGAGGGTGTGGTCATTGCAAGTGTCAGGGGTGACATTGAGTTCCAGAATgtgtgttttaagtaccccttgcgcccaaatgttcagatcttcaaggatctatccttgagcattccttctggaaaggttgccttctgtctgaactaacaagtaaaatatttatttctttacaaactgctgtttggtgcataactttattgacgggattatcatttcag

Basic information

species Oryza sativa
transcript LOC_Os01g35030.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g35030.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G412276_T01 (Zea mays), 5'ss of exon 10
TTCTGTCTTCAAAATTCTTGATCGTAAATCCAAGATTGATTCGAGCAATGATGAGGGTGTGGTCATTGCAAGTGTCAGGGGTGACATTGAGTTCCAGAATgtgtgttttaagtaccccttgcgcccaaatgttcagatcttcaaggatctatccttgagcattccttctggaaaggttgccttctgtctgaactaacaagtaaaatatttatttctttacaaactgctgtttggtgcataactttattgacgggattatcatttcag-------------------
                                                                            ||||| ||| | || |||||||| || || || |||||||| ||| | || || || ||||||||||||||| | ||  |||| |||||||| |||||||||||    | | |    ||| || |   | |  | | |     |  || |  |    | || | |  | | | | |  |||||   |  |                    
---------------------------------------------------------------------------GAGGGGCGACGTCGACTTCCAGAAAGTCTGCTTCAAGTACCCGTTGAGACCGAACGTCCAGATCTTCAAGGATTTTTCACTGAGGATTCCTTCCGGAAAGgttgctcctttttt--tttaataatttggacacatttcttccacctgaccgacgc--agagcttgatctcaataatgccattatatatataatatattatcctcgctgcag

upper sequence: LOC_Os01g35030.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G086730_T01 (Zea mays), 5'ss of exon 11
TTCTGTCTTCAAAATTCTTGATCGTAAATCCAAGATTGATTCGAGCAATGATGAGGGTGTGGTCATTGCAAGTGTCAGGGGTGACATTGAGTTCCAGAATgtgtgttttaagtaccccttgcgcccaaatgttcagatcttcaaggatctatccttgagcattccttctggaaaggttgccttctgtctgaactaacaagtaaaatatttatttctttacaaactgctgtttggtgcataactttattgacgggattatca--tttcag
                                                                           |||||| || || || |||||||| ||||| || ||||| ||  | || |||||||||||||||||||||||||| ||  | ||||||||||||||||||||      |     ||| |    |  | || |   | |    |   | ||| | ||   || | |   |   || ||   |       || |||
---------------------------------------------------------------------------CAGGGGGGAGATCGACTTCCAGAACGTGTGCTTCAAGTATCCGCTACGGCCAAATGTTCAGATCTTCAAGGATCTGTCACTAAGCATTCCTTCTGGAAAGgtcaa---caaatcgaattccacaccagaacaagaaatggaatctgagctgatcttccctg-acactgtcgctgtcgctgtcgcttgcttgcag