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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCTTGTCGGGAACTAGTGTGAAGACCCATTTCGCACGACCTAATTGGCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttcttcttcctgtcctttcaaatccagtagtaggaatgtccatgatccattgcatattaaccctgtatatttcttcag

Basic information

species Oryza sativa
transcript LOC_Os01g25820.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88268267|gb|CI378202.1|CI378202
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTTTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|88839228|gb|CI000700.1|CI000700
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|22304881|gb|BQ906103.1|BQ906103
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|87026874|gb|CI259527.1|CI259527
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|18386603|gb|BM419801.1|BM419801
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCACGTTG
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCA-GTTG
EST: gi|88278864|gb|CI397668.1|CI397668
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86903444|gb|CI322927.1|CI322927
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTTCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|29631716|gb|CB636725.1|CB636725
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTAATGTGGTGAGCCTGTGCTGAAACACCCAACTAAGGCAGTTG
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTC-CCCAACTAAGGCAGTTG
EST: gi|22304870|gb|BQ906092.1|BQ906092
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|88970125|gb|CI383627.1|CI383627
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGACCCTTTTCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86838358|gb|CI327731.1|CI327731
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|29686947|gb|CB683222.1|CB683222
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGT
EST: gi|58677656|gb|CK066343.1|CK066343
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAACCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86502786|gb|CI145419.1|CI145419
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86882132|gb|CI325666.1|CI325666
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86844292|gb|CI337648.1|CI337648
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|29631697|gb|CB636706.1|CB636706
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|7332717|gb|AU086063.1|AU086063
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86889041|gb|CI314657.1|CI314657
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|88457621|gb|CI537019.1|CI537019
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|88275948|gb|CI396552.1|CI396552
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|163926970|gb|EG710212.1|EG710212
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|58660191|gb|CK048871.1|CK048871
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAACCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86852169|gb|CI319104.1|CI319104
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|700000|gb|D46291.1|D46291
EST:     GCGAAG-GTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTNCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86903049|gb|CI324519.1|CI324519
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86434534|gb|CI105767.1|CI105767
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|29663215|gb|CB659490.1|CB659490
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|29631693|gb|CB636702.1|CB636702
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86869218|gb|CI338942.1|CI338942
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|15856444|gb|BI809256.1|BI809256
EST:     GCGAAGCGTCTTCAAGAAGGTT-CGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|22305179|gb|BQ906401.1|BQ906401
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|58693753|gb|CK082440.1|CK082440
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAACCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGCTTG
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAG-TTG
EST: gi|88323419|gb|CI553664.1|CI553664
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86870035|gb|CI317956.1|CI317956
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|29633928|gb|CB638937.1|CB638937
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|58030758|gb|CX728301.1|CX728301
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTTTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|186893180|gb|FG124865.1|FG124865
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAACCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86859922|gb|CI321911.1|CI321911
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|29687358|gb|CB683633.1|CB683633
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|88969675|gb|CI383178.1|CI383178
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCACCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGTTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|88846112|gb|CI372880.1|CI372880
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|8527272|gb|AU092087.1|AU092087
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
EST: gi|86864463|gb|CI334163.1|CI334163
EST:     GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCG                         GTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT
genomic: GCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 69 (upstream exon), 69 (downstream exon)
Score: 42

GATATCTTGTCGGGAACTAGTGTGAAGACCCATTTCGCACGACCTAATTGGCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttctt ... atttcttcagGTGTGTTCTACTGTGGTGAGCCTGTGCTGGTTCCCCAACTAAGGCAGTTGTCAGCAGATTTCACCCACAAGACAAACACAAGATTTGATTTCCACAAGGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATATCTTGTCGGGAACTAGTGTGAAGACCCATTTCGCACGACCTAATTGGCGAAGCGTCTTCAAGAAGGTTGCGGTCAGCCATGAGAACCAGCGCGTCGgtatgttcttcttcctgtcctttcaaatccagtagtaggaatgtccatgatccattgcatattaaccctgtatatttcttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG