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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAATTGCAAGGCACTGTAATTATCTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatgatctttggaaacaactctcttattcaatttgattctcataaaccctaaatcttaaacccttttagtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g25189.4
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g25189.4 (Oryza sativa), 5'ss of exon 12
lower sequence: AT3G52940.1 (Arabidopsis thaliana), 5'ss of exon 12
GGGAATTGCAAGGCACTGTAATTATCTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatgatctttggaaacaactctcttattcaatttgattctcataaaccctaa-----atcttaaacccttttagtgcag-------------------------------------------------------------------------------------------------------------
|||||||||||||||||||||||| ||||| ||  |  |||| ||||| || || || || || |||||||  |||| |   |  |||     |     |||   |   |     | ||   || |  ||||     || | ||| | ||  |                                                                                                                   
GGGAATTGCAAGGCACTGTAATTACCTTGGCGACTTGATGCTTGCTCTGTCCTTCAGTTTGCCATGTGGAATAAGgtaact-tcttctgcttgagttcatcttacagctaccaaaagtcatgtagaaactaataccaatatcaaaacgttcgaagttgatttggctgacttaaagatattgatctctaaccatcatttgaaaagtctaaagctttcaagttcatttcccaaagctgtttttatgatattttgtcttgtgtattctcag

upper sequence: LOC_Os01g25189.4 (Oryza sativa), 5'ss of exon 12
lower sequence: Vv08s0007g03930.t01 (Vitis vinifera), 5'ss of exon 12
GGGAATTGCAAGGCACTGTAATTATCTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgat-----gatgat-ctttggaaaca-actctcttattcaatttgattctcataaaccctaaatcttaaacccttttagtgcag
|||||| ||||||||||||||||| ||||||||  |  || | || || || ||||| ||||| ||||| |  |||| ||      || || || ||   |||   |  | ||||||   |  |  |  | ||   |   | ||    |   ||  |||||
GGGAATCGCAAGGCACTGTAATTACCTTGGGGACTTGTTGTTGGCACTGTCCTTTAGTTTACCTTGTGGGATAAGgtaattcctaaatcatactgtgttgacatggttacatattcacaattttcattttgaatgttctcttttttttctactttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88522833|gb|CI450626.1|CI450626
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88532936|gb|CI462268.1|CI462268
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88551911|gb|CI482008.1|CI482008
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88376078|gb|CI530582.1|CI530582
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88527617|gb|CI455791.1|CI455791
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGTGCAG                     
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAA-C----CAGgtgatgatga ... tttagt
EST: gi|88555636|gb|CI485908.1|CI485908
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88478942|gb|CI416213.1|CI416213
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88533815|gb|CI460483.1|CI460483
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|33689268|gb|CF317507.1|CF317507
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGTGCAG                     
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAA-C----CAGgtgatgatga ... tttagt
EST: gi|88542985|gb|CI472349.1|CI472349
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88554518|gb|CI484704.1|CI484704
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGTGCAG                     
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAA-C----CAGgtgatgatga ... tttagt
EST: gi|88532876|gb|CI461323.1|CI461323
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88537897|gb|CI466882.1|CI466882
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88552415|gb|CI482419.1|CI482419
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88549113|gb|CI478971.1|CI478971
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88840388|gb|CI079842.1|CI079842
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TGCAGTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagT----T-CGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTG
EST: gi|88554216|gb|CI484383.1|CI484383
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88550467|gb|CI478444.1|CI478444
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88546361|gb|CI475991.1|CI475991
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|87015902|gb|CI279654.1|CI279654
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88536421|gb|CI466172.1|CI466172
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTAATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88227443|gb|CI226923.1|CI226923
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88553441|gb|CI483555.1|CI483555
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
EST: gi|88527939|gb|CI456136.1|CI456136
EST:     CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAG                         TTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG
genomic: CTTGGGGATATACTGCTAGCTCTTTCATTTAGCTTACCCTGTGGAACCAGgtgatgatga ... tttagtgcagTTCGGTGATCCCATACTTCTACCCAACATACCTGTTCATTTTGCTGATATG