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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTGTATTAGAAGCATTATACAGGCGTATACTTAGAGCAGAAAAGGAGAAAAGGTGCTTCCGGGTTATAATTGTCATACCGCTTTTACCTGGATTTCAGgtatgttctgttgtaacaattattgatggttttgatgcttcgtgttggccggttaattacatgtttaattacag

Basic information

species Oryza sativa
transcript LOC_Os01g20860.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g20860.1 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G158008_T01 (Zea mays), 5'ss of exon 4
CCGTGTATTAGAAGCATTATACAGGCGTATACTTAGAGCAGAAAAGGAGAAAAGGTGCTTCCGGGTTATAATTGTCATACCGCTTTTACCTGGATTTCAGgta-tgttctgttgtaacaattat----tgatg---gttttgatgcttcgtgttggccggttaattacatgtttaattacag
 ||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||  || || ||||| |||| |     |||     | |||| |||||   |||||| |  || |||  ||||| ||| |||
TCGTGTATTAGAAGCACTATATAGGCGCATACTTAGAGCAGAAAAAGAGAAAAGGCGCTTCCGGGTTATTATTGTCATACCACTTTTACCTGGTTTTCAGgtagcgtgcttttgtatcaatgacactatgacacatggtttggtgcttaaggttggctgtatagttaattgttttatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|1631485|gb|C19214.1|C19214
EST:     AAGGTGCTTCCGGGTTATAATTGTCATACCGCTTTTACCTGGGATTTCAG                         GGAGGCATTGATGACGGTGGAGCAGCATCTGTTAGAGCAATTATGCACTG
genomic: AAGGTGCTTCCGGGTTATAATTGTCATACCGCTTTTACCTGG-ATTTCAGgtatgttctg ... ttaattacagGGAGGCATTGATGACGGTGGAGCAGCATCTGTTAGAGCAATTATGCACTG
EST: gi|88402516|gb|CI598743.1|CI598743
EST:     AAAGGTGCTTCCGGGTTATAATTGTCATACCGCTTTTACCTGGATTTCAG                         GGAGGCATTGATGACGGTGGAGCAGCATCTGTTAGATCCAATTATGGAGTT
genomic: AAAGGTGCTTCCGGGTTATAATTGTCATACCGCTTTTACCTGGATTTCAGgtatgttctg ... ttaattacagGGAGGCATTGATGACGGTGGAGCAGCATCTGTTAGAGC-AATTATGCACT-