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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTGTTAATTCATCCATTCTTCGATGAACTACGAGATCCAAATGCTCGCTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaagatttttgtcaatgccagaccaactgaaacaccctgacagcaatatcctgatttgctaactactgaacttgaacag

Basic information

species Oryza sativa
transcript LOC_Os01g19150.5
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g19150.5 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA02G01220.1 (Glycine max), 5'ss of exon 12
GAGGTGTTAATTCATCCATTCTTCGATGAACTACGAGATCCAAATGCTCGCTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaag--ttaagatttttgtcaatgccagaccaactgaaacaccctgacagcaatatcc-tgatttgctaa-----ctactgaacttgaacag
||||  ||   ||| |||||||| |||||||| || ||||||||| ||||| |||||||||| |||   ||||||||||| || || ||||   |   |||||||   |||   | |  | |||   |      ||   |  |  | |    | |     ||   |||| |     |   ||  ||   ||||
GAGGCCTTGGCTCACCCATTCTTTGATGAACTGCGTGATCCAAATACTCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaactaattctctgatgaatattatgtt--cttgtatccttttatttaattgcttgtgtaatgctgatgttgccggtgttctgacacag

upper sequence: LOC_Os01g19150.5 (Oryza sativa), 5'ss of exon 12
lower sequence: GLYMA10G01280.2 (Glycine max), 5'ss of exon 12
GAGGTGTTAATTCATCCATTCTTCGATGAACTACGAGATCCAAATGCTCGCTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaag--ttaagatttttgtcaatgccagaccaactgaaacaccc---tgacagca-atatcctgatttgctaactactgaacttgaacag
||||  ||  ||||||||||||| |||||||| || ||||||||| | ||| |||||||||| |||   ||||||||||| || || ||||   |   |||||||   |||   | |    |||     |       |  |       | |  ||   | |  || |    |  |   ||  ||   ||||
GAGGCCTTGGTTCATCCATTCTTTGATGAACTGCGTGATCCAAATACCCGCCTACCAAATGGGCGTTACCTTCCCCCACTCTTTAACTTCAGAGCCAATGgtaagaactaattctctgacaaatattgcatttgtgtatccttttatttaattgcttgtgtgatgctgatgttgccggtgttctgacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29637278|gb|CB642287.1|CB642287
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|86503762|gb|CI146395.1|CI146395
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29670122|gb|CB666397.1|CB666397
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29632836|gb|CB637845.1|CB637845
EST:     ATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: ATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29668964|gb|CB665239.1|CB665239
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|8856575|gb|AU093893.1|AU093893
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29666430|gb|CB662705.1|CB662705
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29619093|gb|CB624105.1|CB624105
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTGTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29634101|gb|CB639110.1|CB639110
EST:     TTACCAAATGGCCGTACTCTTCCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: TTACCAAATGGCCGTACTCTT-CCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29614478|gb|CB619491.1|CB619491
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTGTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29675686|gb|CB671961.1|CB671961
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29624000|gb|CB629011.1|CB629011
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTGTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29633505|gb|CB638514.1|CB638514
EST:     TTCAATTTCAAGCTTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: TTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29666643|gb|CB662918.1|CB662918
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29645803|gb|CB650810.1|CB650810
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29676371|gb|CB672646.1|CB672646
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29666992|gb|CB663267.1|CB663267
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29666993|gb|CB663268.1|CB663268
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29632504|gb|CB637513.1|CB637513
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29666642|gb|CB662917.1|CB662917
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29633965|gb|CB638974.1|CB638974
EST:     TTACCAAATGGCCGTACTCTTCCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: TTACCAAATGGCCGTACTCTT-CCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|33808948|gb|CF330360.1|CF330360
EST:     TCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: TCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29674068|gb|CB670343.1|CB670343
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|33683225|gb|CF311464.1|CF311464
EST:     TCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: TCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29628249|gb|CB633260.1|CB633260
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTGTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29623354|gb|CB628365.1|CB628365
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTGTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|29668829|gb|CB665104.1|CB665104
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
EST: gi|33808952|gb|CF330361.1|CF330361
EST:     CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTG                         AGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG
genomic: CTTACCAAATGGCCGTACTCTTCCCCCACTATTCAATTTCAAGCCTCGTGgtaagttaag ... acttgaacagAGCTGAAAGGAGCATCAATGGAATTTCTTGTGAAGTTGGTTCCACAGCATG