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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTCGCCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtgaaacatgatcacatttatccttgttgatattaccagttaaagtttgttcaagcaggcacttcaattgttctggttatttccgttgtaaacttacaatttgggagctgcaagtcataactttctgatatgatcagctacttacgttgcccctttcttgtttcttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g14860.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g14860.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G024151_T02 (Zea mays), 5'ss of exon 11
GAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTCGCCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtgaaacatgatcacatttatccttgttgatattaccagttaaagtttgttcaagcaggcacttcaattgttctggttatttccgttgtaaacttacaatttgggagct-gcaagtcataactttctgatatgatcagctacttacgttgcccctttcttgtttcttgcag
|| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| ||||||||||| || || ||||| ||||||||||| |||| |||      ||||   ||||   ||    | | ||| |        || |  | ||| |||| |      | || ||   | | | | ||||| |    ||  ||    ||| || |    |    | | |                                           
GAGGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGATCCTAATACTCGCCTTCCAAATGGTCGCTTTTTGCCACCACTATTCAATTTCAAGCCTCACGgtatgttt-----catgcctacataattcaacatcgttatcat-------agctgctacaaccaggtagcagtgtagtactaagtttgttctttgtatatcaccaccttacatgctcgccacctctgttctgcag-------------------------------------------

upper sequence: LOC_Os01g14860.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM5G835235_T02 (Zea mays), 5'ss of exon 10
GAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTCGCCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtgaaacatgatcacatttatccttgttgatattaccagttaaagtttgttcaagcaggcacttcaa--ttgttctggttatttccgttgtaaacttacaatttgggagctgcaagtcataactttctgatatgatcagctacttacgttgcccctttcttgtttcttgcag
|| || ||||| |||||||||||||| ||||||||||| |||||| |||| ||||| |||||||||||  |||| || || ||||||||||||||||| |||| ||| | |  | |  ||   || | | || |||    | |  |||| ||   | | ||   |   || |||  |||||||   ||| |||      | || |||   |     |||| | |  |    | | |                                           
GAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTCGTCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtt-tcatgcctactcgt-ttcagcattattgtcgatgct-gttacagccagctaaatgtgtatctccaagtttgttctttgtatatccacc---agctcacatgctt----ctgccacttctgttctgcag-------------------------------------------

upper sequence: LOC_Os01g14860.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G129482_T01 (Zea mays), 5'ss of exon 6
GAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTCGCCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtgaaacatgatcacatttatccttgttgatattaccagttaaagtttgttcaagcaggcacttcaattgttctggttatttccgttgtaaacttacaatttgggagctgcaagtcataactttctgatatgatcagctacttacgttgcccctttcttgtttcttgcag
|| || ||||| |||||||||||||| ||||||||||| |||||| |||| ||||| |||||||||||  |||| || || ||||||||||||||||| |||| |||           |||    ||  | | |    ||||   ||  | | |  | ||  |||  |  |  ||   ||    | | | | ||||| |   || |  |   |       | ||   || |     |                                        
GAGGCGCTTGTCCACCCATTCTTTGACGAGCTTCGAGATCCTAATACTCGTCTTCCAAATGGCCGCTTCCTGCCACCCCTTTTCAACTTCAAGCCTCACGgtatgtt-----------tcatgcctactcgtttcagcattatt-gtcgatgctgttacagccagctagatgtatatctccaagtttgttctttgtatatccaccagctcacatgcttctgccacttctgttctgcag---------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88840799|gb|CI080253.1|CI080253
EST:     CCTTCCGAATGGCCGCTTTTGGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88837429|gb|CI078789.1|CI078789
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|109712442|gb|CI105050.1|CI105050
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|58686738|gb|CK075425.1|CK075425
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88691118|gb|CI735197.1|CI735197
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88830876|gb|CI079310.1|CI079310
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|86430181|gb|CI082604.1|CI082604
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACATCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88840706|gb|CI080160.1|CI080160
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|58590369|gb|CF988677.1|CF988677
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|86538741|gb|CI178947.1|CI178947
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88997238|gb|CI389904.1|CI389904
EST:     CCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|89169640|gb|CI109999.1|CI109999
EST:     AACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: AACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|218498670|gb|FG952679.1|FG952679
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|58601780|gb|CK012308.1|CK012308
EST:     CCTTCCGAATGGCCGCTTTTTGGCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|29618977|gb|CB623989.1|CB623989
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|58602991|gb|CK013519.1|CK013519
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGA
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGA
EST: gi|58689596|gb|CK078283.1|CK078283
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTGGTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|86435919|gb|CI107152.1|CI107152
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|58672614|gb|CK061300.1|CK061300
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88996910|gb|CI389576.1|CI389576
EST:     CCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|89188311|gb|CI115560.1|CI115560
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88249043|gb|CI248892.1|CI248892
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|5003278|gb|AU068427.1|AU068427
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|218501699|gb|FG952639.1|FG952639
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|16753402|gb|BM037767.1|BM037767
EST:     TCAACTTCAAG-CTCATG                         AACTTGAAAGGAATCCCATCAGATATTAT-GCGAAATGGATCCCAGAACAT
genomic: TCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAAC-TGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACAT
EST: gi|109712624|gb|CI105232.1|CI105232
EST:     CCGCTTTTTGCCTCCTCTCTTGAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|58676941|gb|CK065628.1|CK065628
EST:     CCTCTCTTCAATTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|38470230|gb|CF954361.1|CF954361
EST:     TTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: TTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|86593838|gb|CI260067.1|CI260067
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCCCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|86834649|gb|CI340766.1|CI340766
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88271763|gb|CI387816.1|CI387816
EST:     TTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: TTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|55411037|gb|CV723413.1|CV723413
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88834039|gb|CI077520.1|CI077520
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|29677191|gb|CB673466.1|CB673466
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88268674|gb|CI378609.1|CI378609
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88960574|gb|CI006535.1|CI006535
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|3763206|gb|AU029958.1|AU029958
EST:     GGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: GGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88220028|gb|CI219588.1|CI219588
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|218501528|gb|FG953636.1|FG953636
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|87038213|gb|CI192835.1|CI192835
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCGGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88994735|gb|CI036316.1|CI036316
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTGTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|87007029|gb|CI275337.1|CI275337
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|33691829|gb|CF320068.1|CF320068
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCTTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|88845974|gb|CI084704.1|CI084704
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|2317500|gb|C22554.1|C22554
EST:     CCTTCCGAATGGCCGCTTTTTGCCTCTTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
EST: gi|58679590|gb|CK068277.1|CK068277
EST:     CTCCTCTCTTCAACTTCAAGCCTCATG                         AACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG
genomic: CTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtg ... tttcttgcagAACTGAAAGGAATCCCATCAGATATTATGGCGAAATTGATCCCAGAACATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTCGCCTTCCGAATGGCCGCTTTTTGCCTCCTCTCTTCAACTTCAAGCCTCATGgtaagttgtgaaacatgatcacatttatccttgttgatattaccagttaaagtttgttcaagcaggcacttcaattgttctggttatttccgttgtaaacttacaatttgggagctgcaagtcataactttctgatatgatcagctacttacgttgcccctttcttgtttcttgcag

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