Sequence
atgc intronic sequence ATGC exonic sequenceGAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAATTGCAAGTGgttaggctccttactagttgctacatatgagacttaagcaattacatatctttggattatctcgacaatttggctgcatccctaaatagagggtgctgac...
Basic information
species | Oryza sativa |
transcript | 13114.m00153 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: 13114.m00153 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G461569_T01 (Zea mays), 5'ss of exon 9
GAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAATTGCAAGTGgttaggctccttactagttgctacatatgagacttaagcaattacatatctttggattatctcgacaatttggctgcatccctaaatagagggtgctgac-
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GAAGTTATTGCATCTGAAGGCATGATTGTCACTGCTGGTGGCATAGATTGCCATGTCCACTTTATATGTCCTCAGTTGGCAGAAGAGGCAATTGCAAGCGgttaggcttcttgacttctaccatatattaggtgcaaccaaatacacttcatttgattatcatggaaatttcaccat-tttacaaacaaagggtatcaaat
upper sequence: 13114.m00153 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G060656_T01 (Zea mays), 5'ss of exon 3
GAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAATTGCAAGTGgttaggctccttactagttgctacatatgagacttaagcaattacatatctttggattatctcgacaatttggctgcatccctaaatagagggtgctgac-
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GAAGTTATTGCATCTGAAGGCATGATTGTCACTGCTGGTGGCATAGATTGCCATGTCCACTTTATATGTCCTCAGTTGGCAGAAGAGGCAATTGCAAGCGgttaggcttcttgacttctaccatatattaggtgcaatcaaatacacttcatttgattatcatggaaatttcaccat-tttacaaacaaagggtatcaaat
upper sequence: 13114.m00153 (Oryza sativa), 5'ss of exon 12
lower sequence: GRMZM2G465035_T01 (Zea mays), 5'ss of exon 3
GAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAATTGCAAGTGgttaggctccttactagttgctacatatgagacttaagcaattacatatctttggattatctcgacaatttggctgcatccctaaatagagggtgctgac-
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GAAGTTATTGCATATGAAGGCATGATTGTCACTGCTGGTGGCATAGATTGCCATGTCCACTTTATATGTCCTCAGTTGGCAGAAGAGGCAATTGCAAGCGgttaggcttcttgacttctaccatatattaggtgcaatcaaatacacttcatttgattatcatggaaatttcaccat-tttacaaacaaagggtatcaaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29616662|gb|CB621674.1|CB621674EST: CCATGTTCACTTCATATGCCCTCAATTGGCAGAAGAGGCAATTGCAAGTG GCATCACAACATTGGTGGGAGGTGGAACTGGACCAGCACATGGAACTTGTG
genomic: CCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAATTGCAAGTGgttaggctcc ... ttacttatagGCATCACAACATTGGTGGGAGGTGGAACTGGACCAGCACATGGAACTTGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGTTATTGCTGCTGAAGGCATGATTGTTACTGCTGGTGGAATTGATTGCCATGTTCACTTCATATGCCCTCAGTTGGCAGAAGAGGCAATTGCAAGTGgttaggctccttactagttgctacatatgagacttaagcaattacatatctttggattatctcgacaatttggctgcatccctaaatagagggtgctgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagggtg