1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGGCATCATCTTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATTGTCAGAACGgtgagttaaataccgccttgttactgcataaatttgataactggcagacacaaaaaatatgcatgtgatgaataatgtaatgcatccag
species | Oryza sativa |
transcript | LOC_Os12g40490.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACAAGGGGACTATGTCTTTCTGAAGAGCAAATTGTCAGAACG ATCTTAAGAAGACCAATAATTGGACCGGGAAACAGAATTATAGATATGATCEST: gi|28298264|gb|CB238494.1|CB238494
genomic: ACAAGGGGACTATGTCTTTCTGAAGAGCAAATTGTCAGAACGgtgagttaaa ... atgcatccagATCTTAAGAAGACCAATAATTGGACCGGGAAACAGAATTATAGATATGATC
EST: TTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATTGTCAGAACG ATCTTAAGAAGACCAEST: gi|29637733|gb|CB642742.1|CB642742
genomic: TTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATTGTCAGAACGgtgagttaaa ... atgcatccagATCTTAAGAAGACCA
EST: TTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATTGTCAGAACG ATCTTAAGAAGACCAATAATTGGACCGGGAAACAGAATTATAGATATGATC
genomic: TTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATTGTCAGAACGgtgagttaaa ... atgcatccagATCTTAAGAAGACCAATAATTGGACCGGGAAACAGAATTATAGATATGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCATCATCTTCCTGAAACAAGGGGACTATGTCTTTCTGAAGAGCAAATTGTCAGAACGgtgagttaaataccgccttgttactgcataaatttgataactggcagacacaaaaaatatgcatgtgatgaataatgtaatgcatccag
- - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - AGAGCA