1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAAAACTGGGCTTCGCAGCAGGGAGTTACATACACCGATTTCGTAGATTTGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGgtttgtattctccactcacctcgtccatcaataatgtagggtgcatccttggatgaactctagacctggccctttgcggcatactaatttgaacgtaagctgaaaatttgcaaaccacgtccacttttagaatgaaaaattcaactctaatgacataaacttgctatttcag
species | Oryza sativa |
transcript | LOC_Os12g07110.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTT-GATCTCTATCAAAG GCTGCGAAGCAAGCGCGACT-GAGAAGTTTGAGATCCCGGCCAAGATCAAGEST: gi|88263749|gb|CI366650.1|CI366650
genomic: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGgtttgtattc ... gctatttcagGCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAG
EST: TGTGCCAGAAGCCAGAGG-TGTTAAAGAAGTGCTT-GATCTCTATCAAAG GCTGCGAACCAAGCGCGACTGGAGAAATTTGAGATCCCGGCCAAGATCAAGEST: gi|88490515|gb|CI427787.1|CI427787
genomic: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGgtttgtattc ... gctatttcagGCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAG
EST: CAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAG GCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAGEST: gi|29674410|gb|CB670685.1|CB670685
genomic: CAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGgtttgtattc ... gctatttcagGCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAG
EST: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAG GCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAGEST: gi|29622299|gb|CB627310.1|CB627310
genomic: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGgtttgtattc ... gctatttcagGCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAG
EST: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAG GCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAGEST: gi|86436734|gb|CI118456.1|CI118456
genomic: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGgtttgtattc ... gctatttcagGCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAG
EST: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAG GCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAGEST: gi|86418620|gb|CI032829.1|CI032829
genomic: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGgtttgtattc ... gctatttcagGCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAG
EST: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAG GCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAGEST: gi|88486659|gb|CI423930.1|CI423930
genomic: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGgtttgtattc ... gctatttcagGCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAG
EST: GTGCTTGGATCTCTATCAAAG GCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAGEST: gi|88506918|gb|CI434424.1|CI434424
genomic: GTGCTTGGATCTCTATCAAAGgtttgtattc ... gctatttcagGCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAG
EST: GTTAAAGAAGTGCTTGGATCTCTATCAAAG GCTGCGAAGCAAGCGCGACTGGAGAANTTTGAGATCCCGGCCAAGATCAAGEST: gi|86479777|gb|CI122410.1|CI122410
genomic: GTTAAAGAAGTGCTTGGATCTCTATCAAAGgtttgtattc ... gctatttcagGCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAG
EST: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAG GCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAGEST: gi|86874630|gb|CI318189.1|CI318189
genomic: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGgtttgtattc ... gctatttcagGCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAG
EST: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGG GCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAEST: gi|89195791|gb|CI007210.1|CI007210
genomic: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAA-Ggtttgtattc ... gctatttcagGCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAA
EST: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAG GCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAG
genomic: TGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGgtttgtattc ... gctatttcagGCTGCGAAGCAAGCGCGACTGGAGAAGTTTGAGATCCCGGCCAAGATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAACTGGGCTTCGCAGCAGGGAGTTACATACACCGATTTCGTAGATTTGTGCCAGAAGCCAGAGGCTGTTAAAGAAGTGCTTGGATCTCTATCAAAGgtttgtattctccactcacctcgtccatcaataatgtagggtgcatccttggatgaactctagacctggccctttgcggcatactaatttgaacgtaagctgaaaatttgcaaaccacgtccacttttagaatgaaaaattcaactctaatgacataaacttgctatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT