Sequence
atgc intronic sequence ATGC exonic sequenceGTGAATGATTATCCACAGAGGAGATATAGGATTGTTCTAAGGAGTACTATGGGTCCAATAGATGTCTACCTAGTTAGgtatatgcttatctacttgaactacttgtacatctatgttatgatcatagcttcacaatgtagagctctaacttagcatgaaggctaatgccattatttatttatttttag
Basic information
species | Oryza sativa |
transcript | LOC_Os12g06200.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os12g06200.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G052515_T01 (Zea mays), 5'ss of exon 11
GTGAATGATTATCCACAGAGGAGATATAGGATTGTTCTAAGGAGTACTATGGGTCCAATAGATGTCTACCTAGTTAGgtatatg---cttatctacttgaactacttgtacatctatgttatgatcatagcttcacaatgtagagctctaacttagcatgaaggctaatgccattatttatttatttttag
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GTTAATGATTATCCTCAAAGGAGATATAGGATTGTCCTAAGAAGTACCATGGGTCCGATAGATGTGTACCTAGTTAGgtatatcttccttgtttccatatacacctgacattattgtactaaaaacataaattcagaatgtacatctccaacct-gcctgcctaacattgt-gttattggttgatcatag-
upper sequence: LOC_Os12g06200.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA11G18400.1 (Glycine max), 5'ss of exon 7
GTGAATGATTATCCACAGAGGAGATATAGGATTGTTCTAAGGAGTACTATGGGTCCAATAGATGTCTACCTAGTTAGgtatatgcttatctactt---gaactacttgtacatctatgttatgatca--tagcttcacaatgtagagctctaacttagcatgaaggcta-atgccattatttatttatttttag---------------------------
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GCTGTTGATTATCCGCAGAGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCAATAGATCTTTACCTTGTTAGgtattttttttcatggttctaaagtcatttacctaaagggtttatgatcagatgacaatgctagatgagacaatggtgcttcacaattgcaacatgtaataaattcaggattcctgacctctccttttttctttgccattttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58679104|gb|CK067791.1|CK067791EST: AGGATTGTTCTAAGGAGTACTATGGGTCCAATAGATGTCTACCTAGTTAG TCAATTTGAGGAGATGAGTGGCATGGAGACTCCTCCAAGGACTGTGCAGCC
genomic: AGGATTGTTCTAAGGAGTACTATGGGTCCAATAGATGTCTACCTAGTTAGgtatatgctt ... ttatttttagTCAATTTGAGGAGATGAGTGGCATGGAGACTCCTCCAAGGACTGTGCAGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAATGATTATCCACAGAGGAGATATAGGATTGTTCTAAGGAGTACTATGGGTCCAATAGATGTCTACCTAGTTAGgtatatgcttatctacttgaactacttgtacatctatgttatgatcatagcttcacaatgtagagctctaacttagcatgaaggctaatgccattatttatttatttttag
- - - - - - - - - - - - - - - - - - - AAGGAG