Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATATCTCATATCTACCTTTAGCTCACATCTATGAGAGAGTTAACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGGgtatgcagatccaaaaccatttaggttgttaattttgtagttatttgcatttgctgtttgtgtaaataataaaaccagtagaataatggggtttctgagt...

Basic information

species Oryza sativa
transcript LOC_Os12g04990.3
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g04990.3 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G176546_T01 (Zea mays), 5'ss of exon 3
GTATATCTCATATCTACCTTTAGCTCACATCTATGAGAGAGTTAACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGGgtatgcagatccaaaaccatttaggttgttaattttgtagttatttgcatttgctgtttgtgtaaataataaaaccag--tagaataatggggtttc-tgagt--
||||||||||||||| ||||| |||||||| || ||||| ||||||||| |  |||   | |||| ||||||||||||||| |||||||||||||||||||||| |||    |||| |  || ||  | | ||  ||  |       ||   |   || |||| ||     |  | | || ||| |  ||  | |    
GTATATCTCATATCTGCCTTTGGCTCACATTTACGAGAGGGTTAACCAGATTGCAGCACTGCACTGTGGTGTTGCCATTGGATTCTACCAAGGGgtatgcagattcaactttatttggaatgatatctatataactacata-----actacataactacataacaatttttgatttgcattatgagaattaattaacac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58602340|gb|CK012868.1|CK012868
EST:     ACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGCATTGAGACCAACAGTATTT
genomic: ACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGGgtatgcagat ... ttgtttctagGATAATTTGAAGCTGATGGATGATCTGGCTGCATTGAGACCAACAGTATTT
EST: gi|58693358|gb|CK082045.1|CK082045
EST:     TGGTGTTGCCATTGGTTTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGCATTGAGACCAACAGTATTT
genomic: TGGTGTTGCCATTGGTTTCTACCAAGGGgtatgcagat ... ttgtttctagGATAATTTGAAGCTGATGGATGATCTGGCTGCATTGAGACCAACAGTATTT
EST: gi|58655107|gb|CK043787.1|CK043787
EST:     ACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGCATTGAGACCAACAGTATTT
genomic: ACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGGgtatgcagat ... ttgtttctagGATAATTTGAAGCTGATGGATGATCTGGCTGCATTGAGACCAACAGTATTT
EST: gi|58694148|gb|CK082835.1|CK082835
EST:     ACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGCATTGAGACCAACAGTATTT
genomic: ACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGGgtatgcagat ... ttgtttctagGATAATTTGAAGCTGATGGATGATCTGGCTGCATTGAGACCAACAGTATTT
EST: gi|33797098|gb|CF324415.1|CF324415
EST:     ACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGCATTGAGACCAACAGTATTT
genomic: ACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGGgtatgcagat ... ttgtttctagGATAATTTGAAGCTGATGGATGATCTGGCTGCATTGAGACCAACAGTATTT
EST: gi|58689916|gb|CK078603.1|CK078603
EST:     ACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGCATTGAGACCAACAGTATTT
genomic: ACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGGgtatgcagat ... ttgtttctagGATAATTTGAAGCTGATGGATGATCTGGCTGCATTGAGACCAACAGTATTT
EST: gi|58666789|gb|CK055475.1|CK055475
EST:     ACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGG                         GATAATTTGAAGCTGATGGATGATCTGGCTGC
genomic: ACCAGGTCTCAGTGGTTCACTATGGTGTTGCCATTGGTTTCTACCAAGGGgtatgcagat ... ttgtttctagGATAATTTGAAGCTGATGGATGATCTGGCTGC