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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCAGTACTGCTTGTGGCCGCTCCTAAGTTTGGTCTTGGTGGCGTCTGGGCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatggatgattgcttaggatgtaggccaattctgttagaaagcaaagttgttgacttgagtgattttgtggtttttcag

Basic information

species Oryza sativa
transcript LOC_Os12g01580.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g01580.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM5G890665_T01 (Zea mays), 5'ss of exon 11
CAGCAGTACTGCTTGTGGCCGCTCCTAAGTTTGGTCTTGGTGGCGTCTGGGCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatggatgattgcttag---------gatgtag--gccaattctg----ttagaaagcaaagttgttgacttgagtg--attttgtggtttttcag-------------------------------------------------------------------
||  | | || ||  | || |||||||| | |||||| |||||| | |||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||  |||||  ||| |         ||| ||       ||| |     ||    ||| || |   |||    |  |  || ||   ||  |  |                                                                    
CAATATTCCTACTATTAGCTGCTCCTAATTATGGTCTCGGTGGCATATGGGCTGGTCTTACTCTATTTATGAGTTTGCGTGCAGTTGCTGGGTTCTGGAGgtagtaataaatgatccctttgttcatctctgatttatttatttattttcattttttaggagccaattcagtgaggaaaagggaatattcctgtactggaatcttgaacagaagcagcatgaagtcttaaattttaaaagcggtcttttatttttgtttttttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13165491|gb|AU174288.1|AU174288
EST:     GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAG                         GTTAGGGAGCAAAGGTGGACCATGGAAAATAATTTGGTCTGAAACTGAGTA
genomic: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatgg ... ggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
EST: gi|29639601|gb|CB644610.1|CB644610
EST:     GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAG                         GTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
genomic: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatgg ... ggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
EST: gi|25806216|gb|CA762177.1|CA762177
EST:     GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAG                         GTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
genomic: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatgg ... ggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
EST: gi|86875497|gb|CI323892.1|CI323892
EST:     GCTGCCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTATGGAG                         GTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
genomic: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatgg ... ggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
EST: gi|88254712|gb|CI353536.1|CI353536
EST:     CTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAG                         GTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
genomic: CTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatgg ... ggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
EST: gi|86850911|gb|CI338887.1|CI338887
EST:     GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAG                         GTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA
genomic: GCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGgtagtaatgg ... ggtttttcagGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTA