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TGATAAAGGTTTTGGCTTTGTGCGTTACAGCACCCATGAAGAAGCTGCTCTAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcatcttcaatgtttcagccataaatacatttaatataagagtgttttgggtagatcaatcataaggatggtttgccatgcccatgcttattag...
species | Oryza sativa |
transcript | LOC_Os11g40510.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|89172073|gb|CI721132.1|CI721132
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|29641559|gb|CB646566.1|CB646566
genomic: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|218492528|gb|FG964892.1|FG964892
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|88690783|gb|CI734862.1|CI734862
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|88675589|gb|CI729702.1|CI729702
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|88594113|gb|CI713284.1|CI713284
genomic: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|218488001|gb|FG950016.1|FG950016
genomic: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCACTAEST: gi|88689298|gb|CI732874.1|CI732874
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|88211493|gb|CI211133.1|CI211133
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|88665500|gb|CI715656.1|CI715656
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|88687915|gb|CI731491.1|CI731491
genomic: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|86259164|gb|CI010465.1|CI010465
genomic: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|218500340|gb|FG948524.1|FG948524
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCACTAEST: gi|88219588|gb|CI219148.1|CI219148
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTCEST: gi|86543833|gb|CI184039.1|CI184039
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCTATTCAGACTGGTAATGGACAACTTATTGTCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|88675129|gb|CI729242.1|CI729242
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|29640531|gb|CB645540.1|CB645540
genomic: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|55410007|gb|CV722383.1|CV722383
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|88904553|gb|CI711852.1|CI711852
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|88666971|gb|CI719107.1|CI719107
genomic: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|87019113|gb|CI297314.1|CI297314
genomic: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|218498744|gb|FG958423.1|FG958423
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|88691922|gb|CI735497.1|CI735497
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|88676390|gb|CI730503.1|CI730503
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|38480867|gb|CF964956.1|CF964956
genomic: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|89173139|gb|CI720969.1|CI720969
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|86602523|gb|CI264851.1|CI264851
genomic: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|58587445|gb|CF985753.1|CF985753
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCACTAEST: gi|218482201|gb|FG960522.1|FG960522
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|29642094|gb|CB647101.1|CB647101
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|86254551|gb|CI059278.1|CI059278
genomic: TAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: TGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTAEST: gi|89172269|gb|CI721328.1|CI721328
genomic: TGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
EST: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAG TGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
genomic: GGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcat ... ctacttgcagTGTTCCTGGGGAAGCAAGCCAACTCCACCAGGGACAGCATCCGCGCCCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAAAGGTTTTGGCTTTGTGCGTTACAGCACCCATGAAGAAGCTGCTCTAGCAATTCAGACTGGTAATGGACAACTTATTGGCGGTAGGCAGATCAAGgtacgttcatcttcaatgtttcagccataaatacatttaatataagagtgttttgggtagatcaatcataaggatggtttgccatgcccatgcttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA