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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATTAGGTATCTCATGGAGGATGTGCAAATGATGAAACCAACGGTATTTTGTGGTGTCCCTCGTGTTTATGATCGTATATACACAGgtaaaatgcacaaaaaaagtcaaataattgtctcaattgcaaccacattttgtgattagcggtaatatgggaatatcatgaattgaag

Basic information

species Oryza sativa
transcript LOC_Os11g35400.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g35400.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G104847_T01 (Zea mays), 5'ss of exon 11
GACATTAGGTATCTCATGGAGGATGTGCAAATGATGAAACCAACGGTATTTTGTGGTGTCCCTCGTGTTTATGATCGTATATACACAGgtaaaatgcacaaaaaaagtcaaataattgt-ctcaattgcaaccacattttgtgattagcggtaatatgggaatatcatgaattgaag
||||||||||| || ||||||||||||||| |||||||||| ||  |||| |||||||| ||||||||||||||||||||||| ||||||  |||||| |   | | | || |  || | |||| |   |     ||    || ||||   |||| || | || || | ||||||||
GACATTAGGTACCTGATGGAGGATGTGCAAGTGATGAAACCGACAATATTCTGTGGTGTTCCTCGTGTTTATGATCGTATATATACAGgtttaatgca-acccagaataaatttgttattctcagtactattttgatgccttgcttagtcataatgtgtggatttcgttaattgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58668934|gb|CK057620.1|CK057620
EST:     GCCAACGGTATTTTGTGGTGTCCCTCGTGTTTATGATCGTATATACACAG                         GTATTAATCAGAAAATTCAGTCTGGAGGGATGATAGCCAAAAGCCTTTTCC
genomic: -CCAACGGTATTTTGTGGTGTCCCTCGTGTTTATGATCGTATATACACAGgtaaaatgca ... tgaattgaagGTATTAATCAGAAAATTCAGTCTGGAGGGATGATAGCCAAAAGCCTTTTCC
EST: gi|58659138|gb|CK047818.1|CK047818
EST:     ACCAACGGTATTTTGTGGTGTCCCTCGTGTTTATGATCGTATATACACAG                         GTATTAATCAGAAAATTCAGTCTGGAGGGATGATAGCCAAAAGCCTTTTCC
genomic: ACCAACGGTATTTTGTGGTGTCCCTCGTGTTTATGATCGTATATACACAGgtaaaatgca ... tgaattgaagGTATTAATCAGAAAATTCAGTCTGGAGGGATGATAGCCAAAAGCCTTTTCC
EST: gi|58652930|gb|CK041610.1|CK041610
EST:     ACCAACGGTATTTTGTGGTGTCCCTCGTGTTTATGATCGTATATACACAG                         GTATTAATCAGAAAATTCAGTCTGGAGGGATGATAGCCAAAAGCCTTTTCC
genomic: ACCAACGGTATTTTGTGGTGTCCCTCGTGTTTATGATCGTATATACACAGgtaaaatgca ... tgaattgaagGTATTAATCAGAAAATTCAGTCTGGAGGGATGATAGCCAAAAGCCTTTTCC