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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAGgtagctttttttaccaatgcatccaacatctttactttccaggcaatcctgtaaattttgtaactgcaatagtaaccctattttctggttcactgaag

Basic information

species Oryza sativa
transcript LOC_Os11g33240.2
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 10
GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAGgtagctttttttaccaatgcatccaaca-tctttact----ttccaggcaatcctgtaaattttgtaactgcaatagtaaccctattttctggttc----actgaag-----------------------------
| | ||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || |  ||  || |  || | |||| |    || | ||   ||   | | ||   |   ||  |   |||   | ||| | | ||     | | | |                             
GCTTTGGGAGCCTACTTATGAAGACTGCTTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgtt-cagatatatgcttcaatttttaatgcaattactggaggtcgcatcacttgaatt-ttgtgaagttaaagttgtttacagattttagaattaatgattaatattctttcatttgttgtttgaag

upper sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G064023_T01 (Zea mays), 5'ss of exon 12
GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAGgtagctttt---------tttaccaatgcatccaacatctttactttccaggcaatcctgtaaattttgtaactgcaatagtaacc-ctattttctggttcactgaag--------------------------
||| ||||||||||| |||||||| ||||||||  |||| ||||| ||||||||||||||||| |||||||||||||||||||||||         ||| |       |  ||     |||||      |  |||     ||||||||||    || | |  |  | | |||  |  | | ||||                           
GTTTTGGGAGCCTACTTATGAAGACTGCTTAAACATGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgttcagacatttgcttcaatttttaatgcaattactggaggtggcatcactcgaattttgtaaagttaaaattgtctacaaattttagaattattgaataatattatttcatttgttctttgaag

upper sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G063851_T04 (Zea mays), 5'ss of exon 11
GTTCTGGGAGCCTACCTATGAAGATTGCTTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAGgtagctttt-tttaccaatgcatccaacatctttactttccaggcaatcctgtaaattttgtaactgcaatagtaaccctattttc-tggttcactgaag---------------------------------------------------------
||| ||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||  ||||  ||     |  |    || | ||   |    | | |    |   | |   | ||    | |     || ||   ||||                                                          
GTTTTGGGAGCCTACTTATGAAGACTGCTTAAATTTGATTGCTCGGCTTCCACCAGTGGCTTCTTATGTTTACCGGAGgtagcttttgtttagaaatgtttcatttttaatgcacttactggtggtgacatcagtcaattttttcctgaactagttgtgtacagatgtttttttgaaacagctgcattcaaattttagaattaatgaattatattgtttcatttgttttttgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3758954|gb|C96653.1|C96653
EST:     GTATGTTTACCGGAG                         GATCTTCAAGGATGGGAAAACTATAGCAGCTGATAATGCACTGGACTATGC
genomic: GTATGTTTACCGGAGgtagcttttt ... ttcactgaagGATCTTCAAGGATGGGAAAACTATAGCAGCTGATAATGCACTGGACTATGC
EST: gi|38470398|gb|CF954529.1|CF954529
EST:     TTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAG                         GATCTTCAAGGATGGGAAAACTATAGCAGCTGATAATGCACTGGACTATGC
genomic: TTAAATTTGATAGCTCGCCTTCCACCAGTGGCTTCGTATGTTTACCGGAGgtagcttttt ... ttcactgaagGATCTTCAAGGATGGGAAAACTATAGCAGCTGATAATGCACTGGACTATGC