1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAGgtaattcgtcttctatctgcattaagtaatctgtcgacaatagattctgaacaatctgatttggttacaatcattgaatcaactgagtatgaaaacattctttgtgtatttag
species | Oryza sativa |
transcript | LOC_Os10g40550.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAG GTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAAEST: gi|86842556|gb|CI341723.1|CI341723
genomic: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAGgtaattcgtc ... gtgtatttagGTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAA
EST: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAG GTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAAEST: gi|86846139|gb|CI339762.1|CI339762
genomic: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAGgtaattcgtc ... gtgtatttagGTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAA
EST: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAG GTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAAEST: gi|87032029|gb|CI362109.1|CI362109
genomic: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAGgtaattcgtc ... gtgtatttagGTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAA
EST: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAG GTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAAEST: gi|33682713|gb|CF310952.1|CF310952
genomic: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAGgtaattcgtc ... gtgtatttagGTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAA
EST: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAG GTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAAEST: gi|33822165|gb|CF336898.1|CF336898
genomic: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAGgtaattcgtc ... gtgtatttagGTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAA
EST: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAG GTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAAEST: gi|88254453|gb|CI353277.1|CI353277
genomic: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAGgtaattcgtc ... gtgtatttagGTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAA
EST: CTGTGCCCAAGGATACTGATGCTTTCTATTCCCTACGGGACCCAGCTGAG GTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAA
genomic: CTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAGgtaattcgtc ... gtgtatttagGTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTGAAGGCAAACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGAGgtaattcgtcttctatctgcattaagtaatctgtcgacaatagattctgaacaatctgatttggttacaatcattgaatcaactgagtatgaaaacattctttgtgtatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA