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ATACCAAATCCAGTTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGGTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAGgtatctctttacgtgatgctttgagctttatgttgtagtgctgcctgttcacttttatgtcaattactttacatttctttcagagtacacattttgatct...
species | Oryza sativa |
transcript | LOC_Os10g37210.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAG GTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGAEST: gi|29615151|gb|CB620164.1|CB620164
genomic: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAGgtatctcttt ... tgtacaacagGTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGA
EST: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAG GTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGAEST: gi|218483729|gb|FG951541.1|FG951541
genomic: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAGgtatctcttt ... tgtacaacagGTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGA
EST: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAG CTATGCTGGCTGCAGAAGCAACTTTCCAAACTCTTGTTGAAGGATCTTCGAEST: gi|29657656|gb|CB653931.1|CB653931
genomic: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAGgtatctcttt ... tgtacaacagGTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGA
EST: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAG GTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGAEST: gi|29675569|gb|CB671844.1|CB671844
genomic: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAGgtatctcttt ... tgtacaacagGTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGA
EST: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAG GTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGAEST: gi|29637767|gb|CB642776.1|CB642776
genomic: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAGgtatctcttt ... tgtacaacagGTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGA
EST: CCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAG GTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGAEST: gi|29669361|gb|CB665636.1|CB665636
genomic: CCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAGgtatctcttt ... tgtacaacagGTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGA
EST: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAG GTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGAEST: gi|29676401|gb|CB672676.1|CB672676
genomic: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAGgtatctcttt ... tgtacaacagGTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGA
EST: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAG GTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGAEST: gi|29681493|gb|CB677768.1|CB677768
genomic: GTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAGgtatctcttt ... tgtacaacagGTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGA
EST: GTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAG GTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGA
genomic: GTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAGgtatctcttt ... tgtacaacagGTATGCTGGCTGCAGAAGCAACTTTCAAAACTCTTGTTGAAGGATCTTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACCAAATCCAGTTTTCCCTGGAGGTGCAATTATTGGATGCTCTGCAGGGTTCCTTAATGTTCCCAAAATAAAAGGAACTCATACAGCCATGAAGTCAGgtatctctttacgtgatgctttgagctttatgttgtagtgctgcctgttcacttttatgtcaattactttacatttctttcagagtacacattttgatct
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