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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATAgtgagctttcaaagttctcatctactaatatgttggcttgttgctatctccatgtttaggtgtagccttgctctttgtgtatctactctacttgcagcatgcactaactgaggctcgccaacatttgtag

Basic information

species Oryza sativa
transcript LOC_Os10g36780.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36780.2 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G082502_T01 (Zea mays), 5'ss of exon 11
CTTCTAAAATAGTGTTCACAAATGGCTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATAgtgagctttcaaagttctcatctactaatatgttggcttgttgctatctccatgtttaggtgtagccttgctctttgtgtatctactctacttgcagcatgcactaactgaggctcgccaacatttgtag
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CTTCTAAAATCGTGTTTACAAATGGCTCCCAAGACCCATGGCGCCATGCCTCCAAGCAGAAATCATCGAAAGACAgtgagtccgccagagctccatatacgag-----cgacttatcgcgctgtgcctgtgcaagtg---cttcgctttagatagat-tgctttgttttttg--tgtactgatagatgtctcacaacacatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33793324|gb|CF322543.1|CF322543
EST:     CTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATA                         TGCCATCATACATAATCAAATGTAGAAATTGCGGACATGGCACTGATCTG
genomic: CTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATAgtgagctttc ... acatttgtagTGCCATCATACATAATCAAATGTAGAAATTGCGGACATGGCACTGATCTG
EST: gi|88198073|gb|CI197923.1|CI197923
EST:     CTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATA                         TGCCATCATACATAATCAAATGTAGAAATTGCGGACATGGCACTGATCTGA
genomic: CTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATAgtgagctttc ... acatttgtagTGCCATCATACATAATCAAATGTAGAAATTGCGGACATGGCACTGATCTGA
EST: gi|157649959|gb|EX449593.1|EX449593
EST:     CTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATA                         TGCCATCATACATAATCAAATGTAGAAATTGCTGACATGGCACTGATCTGA
genomic: CTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATAgtgagctttc ... acatttgtagTGCCATCATACATAATCAAATGTAGAAATTGCGGACATGGCACTGATCTGA
EST: gi|88263249|gb|CI367023.1|CI367023
EST:     CGCCATGCCTCGAAACAGAAATCGTCGAAATATA                         TGCCATCATACATAATCAAATGTAGAAATTGCGGACATGGCACTGATCTGA
genomic: CGCCATGCCTCGAAACAGAAATCGTCGAAATATAgtgagctttc ... acatttgtagTGCCATCATACATAATCAAATGTAGAAATTGCGGACATGGCACTGATCTGA
EST: gi|86904683|gb|CI321591.1|CI321591
EST:     CTCTCAAGATCCATGGCGCCATCCCTCGAAACAGAAATCGTCTAAATATA                         TGCCATCATACATAATCAAATGTAGAAATTGCGGACAT-GCACTGATCTGA
genomic: CTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATAgtgagctttc ... acatttgtagTGCCATCATACATAATCAAATGTAGAAATTGCGGACATGGCACTGATCTGA
EST: gi|88968629|gb|CI098843.1|CI098843
EST:     CTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATA                         TGCCATCATACATAATCAAATGTAGAAATTGCGGACATGGCACTGATCTGA
genomic: CTCTCAAGATCCATGGCGCCATGCCTCGAAACAGAAATCGTCGAAATATAgtgagctttc ... acatttgtagTGCCATCATACATAATCAAATGTAGAAATTGCGGACATGGCACTGATCTGA