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GTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAATgtgagcatctgtacagtcctggccatttctttgtttcaatagcactgtttttgtatctcatatgagcatggttaaatagtgtgaatgcattttttatggcattatgatatgcttacaaattatttttcaatgggtacag
species | Oryza sativa |
transcript | LOC_Os10g36760.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAAT TGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTATEST: gi|33794773|gb|CF323266.1|CF323266
genomic: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAATgtgagcatct ... atgggtacagTGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTAT
EST: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAAT TGCCGTCATACTTAATTGAGTGCAGCAATEST: gi|89181004|gb|CI045087.1|CI045087
genomic: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAATgtgagcatct ... atgggtacagTGCCGTCATACTTAATTGAGTGCAGCAAT
EST: AAATCATCAAAAGAAT TGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTATEST: gi|3768110|gb|AU032137.1|AU032137
genomic: AAATCATCAAAAGAATgtgagcatct ... atgggtacagTGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTAT
EST: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAAT TGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTATEST: gi|29667886|gb|CB664161.1|CB664161
genomic: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAATgtgagcatct ... atgggtacagTGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTAT
EST: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAAT TGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTATEST: gi|87031114|gb|CI259694.1|CI259694
genomic: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAATgtgagcatct ... atgggtacagTGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTAT
EST: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAAT TGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTATEST: gi|86897244|gb|CI294318.1|CI294318
genomic: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAATgtgagcatct ... atgggtacagTGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTAT
EST: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAAT TGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTATEST: gi|29678500|gb|CB674775.1|CB674775
genomic: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAATgtgagcatct ... atgggtacagTGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTAT
EST: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAAT TGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTAT
genomic: CTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAATgtgagcatct ... atgggtacagTGCCGTCATACTTAATTGAGTGCAGCAATTGCGGACATTGCAGTGATCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGAAAATTGTTTTTGCAAACGGCTCTCAAGATCCATGGCGCCATGCTTCTAAGCAGAAATCATCAAAAGAATgtgagcatctgtacagtcctggccatttctttgtttcaatagcactgtttttgtatctcatatgagcatggttaaatagtgtgaatgcattttttatggcattatgatatgcttacaaattatttttcaatgggtacag
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